stanislavjiricek/phase-data-preprocess
skills/phase-data-preprocess/SKILL.md
Phase guidance for the neuroflow /data-preprocess command. Loaded automatically when /data-preprocess is invoked to orient agent behavior, relevant skills, and workflow hints for the data-preprocess phase.
$ install --global
skillsauthnpx skillsauth add stanislavjiricek/neuroflow phase-data-preprocessInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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SKILL.md
- name:
- phase-data-preprocess
- description:
- Phase guidance for the neuroflow /data-preprocess command. Loaded automatically when /data-preprocess is invoked to orient agent behavior, relevant skills, and workflow hints for the data-preprocess phase.
phase-data-preprocess
The data-preprocess phase filters, cleans, epochs, and quality-checks raw data to produce analysis-ready datasets.
Approach
- Read
.neuroflow/data/inventory first — understand the dataset before choosing methods - Confirm the modality; preprocessing steps differ significantly between EEG, fMRI, ECG, eye-tracking
- Document every parameter choice (filter cutoffs, epoch windows, rejection thresholds) before running
- QC plots and rejection summaries are required outputs — not optional
Relevant skills
neuroflow:neuroflow-core— read first; defines the command lifecycle and.neuroflow/write rulesneuroflow:bids— invoke when loading BIDS-organized data; coversBIDSLayoutquerying,mne_bids.read_raw_bids(), sidecar metadata fields, and writing preprocessed derivatives back to BIDS
Workflow hints
- All scripts and processed data go to
output_path(scripts/preprocessing/), not inside.neuroflow/ - Save
preprocess-config.mdto.neuroflow/data-preprocess/with the full parameter set used - Log any deviation from a pre-registered preprocessing plan in
.neuroflow/reasoning/data-preprocess.json
Slash command
/neuroflow:data-preprocess — runs this workflow as a slash command.
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