stanislavjiricek/phase-data
skills/phase-data/SKILL.md
Phase guidance for the neuroflow /data command. Loaded automatically when /data is invoked to orient agent behavior, relevant skills, and workflow hints for the data intake phase.
$ install --global
skillsauthnpx skillsauth add stanislavjiricek/neuroflow phase-dataInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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SKILL.md
- name:
- phase-data
- description:
- Phase guidance for the neuroflow /data command. Loaded automatically when /data is invoked to orient agent behavior, relevant skills, and workflow hints for the data intake phase.
phase-data
The data phase locates raw data, validates BIDS structure, and runs conversion scripts to get data ready for preprocessing.
Approach
- Follow the three-step sequence in order: inventory → validate → convert — do not skip ahead
- Confirm data location and expected modality before doing anything
- BIDS compliance is the target; note deviations but do not block progress for minor issues
- Summarize what was found, what passed, and what needs fixing before moving on
Relevant skills
neuroflow:neuroflow-core— read first; defines the command lifecycle and.neuroflow/write rulesneuroflow:bids— invoke whenever BIDS structure, validation, conversion, or sidecar metadata is relevant; provides full entity ordering, required files per modality, tool usage (bids-validator, pybids, MNE-BIDS), and conversion examples
Workflow hints
- Save
data-inventory.mdto.neuroflow/data/listing datasets, paths, and BIDS status - Conversion scripts and outputs go to
output_path, not inside.neuroflow/ - Log any structural data issues that affect analysis choices downstream in
.neuroflow/reasoning/data.json
Slash command
/neuroflow:data — runs this workflow as a slash command.
Related Skills
stanislavjiricek/bids
testing
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This skill should be used whenever the user mentions BIDS, Brain Imaging Data Structure, BIDS conversion, BIDS validation, BIDS compliance, organizing neuroimaging data, dataset_description.json, participants.tsv, bids-validator, pybids, MNE-BIDS, or asks how to structure EEG/MEG/fMRI/iEEG/PET/DWI data for sharing or preprocessing. Also invoke when the user asks how to name scan files, what sidecar JSON fields are needed, how to set up derivatives/, or how to run fMRIPrep/MRIQC on their dataset. Invoke proactively during /data, /data-preprocess, and /data-analyze phases whenever the dataset structure is relevant to the task at hand.
3SKILL.mdUpdated Jun 5, 2026
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3SKILL.mdUpdated Apr 25, 2026
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3SKILL.mdUpdated Apr 14, 2026
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Knowledge base skill — Karpathy-style LLM-maintained wiki at three levels (personal/flowie, project, team/hive). Handles ingest, query, lint, schema, and project-tagging workflows. Invoked by /flowie --wiki-* (personal), /wiki (project), /hive --wiki-* (team).
3SKILL.mdUpdated Apr 14, 2026