skills/integrate-worktrees/SKILL.md
From the main repo on the main branch, scan all linked worktrees, let the user multi-select, then merge --no-ff + push them sequentially and clean up the succeeded ones together.
npx skillsauth add nesnilnehc/ai-cortex integrate-worktreesInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
3 of 9 scanners reported clean
Some scanners were skipped, did not run, or reported a non-clean status. Review each row below.
Closes out a batch of worktrees from the main repo: scan all active linked worktrees, let the user pick which to land, verify all picks are clean, merge and push each in sequence, then remove all successfully-merged worktrees together. Eliminates the need to cd into each worktree directory and invoke a per-branch delivery.
Primary goal: From the main repo on the main branch, land the user-selected worktree branches onto main, deliver them to origin, and clean up succeeded ones — leaving the repository in a known-clean state.
Success Criteria (all must be satisfied):
git worktree list --porcelain parsed; non-main entries presented to user--no-ff and pushed; per-worktree status (succeeded / failed) recordedsucceeded worktrees removed together; no failed worktree is removedAcceptance Test: After skill completes, git log --oneline <main-branch> shows one merge commit per succeeded worktree; git worktree list contains only the main repo plus any failed/skipped worktrees; git ls-remote origin <main-branch> matches local.
This skill handles:
all or index subset)--no-ff merge → push for each selected clean worktree-d only)This skill does NOT handle:
deliver-feature from inside the worktree)commit-work per worktree first)Handoff points:
deliver-feature: when the user is inside a single worktree and wants to land just that branch without cd-ing back to the main repoStep 1 — Verify invocation context
git rev-parse --git-dir # main repo: <root>/.git ; linked worktree: <main-root>/.git/worktrees/<name>
git rev-parse --git-common-dir # both contexts return the same value: <main-root>/.git
git rev-parse --abbrev-ref HEAD # current branch
git rev-parse --show-toplevel # current repo root
A linked worktree has git-dir != git-common-dir (the per-worktree .git/worktrees/<name> vs the shared .git); the main repo has them equal.
If git rev-parse --git-dir differs from git rev-parse --git-common-dir (i.e., CWD is inside a linked worktree) → halt:
"This skill must be run from the main repo, not from inside a worktree. Current location:
<cwd>. To deliver just the current worktree's branch, usedeliver-feature."
If current branch is not the detected main branch (Step 2) → halt:
"Current branch is
<current-branch>, not<main-branch>. Switch to the main branch first:git checkout <main-branch>."
Record <main-repo> (= git rev-parse --show-toplevel). CWD remains here for every subsequent step.
Step 2 — Determine main branch
git remote show origin | grep 'HEAD branch'
HEAD branch: main) → use it.git branch -r for origin/main then origin/master."Could not determine the main branch automatically. What is the name of the main branch (e.g., main, master, develop)?"
Record <main-branch>.
Step 3 — Scan and present active worktrees
git worktree list --porcelain
Parse the porcelain output. The first record is the main repo (its worktree line equals <main-repo>). Each remaining record is a candidate. Build a list of {path, branch} tuples (skip detached entries; report them as ineligible).
"No active linked worktrees found. Nothing to integrate."
Present the list with index, path, branch, and last-activity hint:
Active worktrees available to integrate:
[1] /repos/myapp-auth feat/user-auth (last commit: 2 days ago)
[2] /repos/myapp-api feat/api-v2 (last commit: 5 days ago)
[3] /repos/myapp-ui feat/dashboard (last commit: 14 days ago — STALE)
Ask:
"Which worktrees should be integrated? Enter numbers separated by commas, or type
all:"
Record <selected-list>.
Step 4 — Pre-flight: check all selected worktrees
For each worktree W in <selected-list>:
git -C <W.path> status --porcelain
Collect all results into <clean-list> and <dirty-list>.
If <dirty-list> is non-empty, report all dirty entries in a single block before any merge begins:
Pre-flight check — dirty worktrees (will be skipped):
/repos/myapp-api (feat/api-v2) — 3 uncommitted file(s)
/repos/myapp-ui (feat/dashboard) — 1 uncommitted file(s)
Ask:
"The above worktrees have uncommitted changes. Proceed with the remaining clean worktrees, or halt all? [continue / halt]"
halt → stop; no merges performed.continue → proceed with <clean-list> only. If <clean-list> is empty after filtering → halt with "Nothing left to do."No auto-stash is performed under any condition.
Step 5 — Batch merge + push (sequential)
For each worktree W in <clean-list>:
# Stay current across multi-worktree run
git pull origin <main-branch>
# Merge with --no-ff
git merge --no-ff <W.branch> -m "Merge branch '<W.branch>' into <main-branch>"
# Push
git push origin <main-branch>
CWD remains <main-repo> throughout. (No git -C needed — this skill operates from the main repo directly.)
On failure for worktree W:
"Merge conflict merging
<W.branch>into<main-branch>. Resolve conflicts in<main-repo>, complete the merge manually, then push and remove the worktree."
"Push rejected after merging
<W.branch>. Rungit reset --hard HEAD~1in<main-repo>to undo the merge, then pull, re-merge, and push manually."
In both cases, mark W as failed and ask:
"Continue with the remaining worktrees, or abort all remaining? [continue / abort]"
abort → stop; do not touch any remaining worktrees.continue → mark W as failed, proceed to next.Record per-worktree outcome: succeeded or failed.
Step 6 — Unified cleanup
After all merges complete, verify CWD is still <main-repo>:
pwd # must equal <main-repo>
For each worktree in <succeeded-list> only:
git worktree remove <W.path>
Execute sequentially. If an individual removal fails (e.g., path already gone), log the error and continue with the next.
Never remove a worktree whose status is failed.
Step 7 — Offer to delete feature branches
For all worktrees in <succeeded-list>, present branches together:
"Worktrees removed. Delete these local feature branches? Enter numbers,
all, ornone:"[1] feat/user-auth [2] feat/dashboard
For each confirmed:
git branch -d <W.branch>
Use -d only — never -D. If -d fails (unexpected after a successful --no-ff merge), report the error and stop deletion for that branch.
Step 8 — Summary report
integrate-worktrees summary
──────────────────────────────────────────────────────────────────────────
Worktree Branch Merge Push Cleanup Branch
/repos/myapp-auth feat/user-auth ✓ ✓ ✓ deleted
/repos/myapp-api feat/api-v2 ✗(conflict) — — —
/repos/myapp-ui feat/dashboard skipped(dirty) — — —
──────────────────────────────────────────────────────────────────────────
Main repo: /repos/myapp · Main branch: main · Remote: origin
Status codes: ✓ succeeded · ✗(reason) failed · skipped(dirty) pre-flight fail · — not applicable
| Input | Required | Description |
|---|---|---|
| Main repo + main branch context | Yes | CWD must be the main repo root and current branch must equal the main branch |
| Active linked worktrees | Yes | At least one non-main linked worktree must exist |
| Worktree selection | User input | all or comma-separated indices from the presented list |
| Clean working tree | Per-worktree | Dirty worktrees reported upfront and skipped; no auto-stash |
| Main branch name | Auto/Ask | Detected from remote; user asked if ambiguous |
| Network access | Yes | Required to pull and push to origin |
Produces (side-effects):
| Element | Description |
|---|---|
| Merge commits | One --no-ff merge commit on <main-branch> per succeeded worktree |
| Remote push | origin/<main-branch> updated once per succeeded worktree |
| Worktree removal | All succeeded worktrees removed from git worktree list |
| Branch deletion | Optional, user-confirmed; git branch -d only |
| Batch summary report | Per-worktree table: branch / merge / push / cleanup / branch-deletion status |
--force, --force-with-lease) to any branchgit branch -D — only -d (safe delete)Do not do these (other skills or tools handle them):
deliver-feature from inside the worktreecommit-work per worktree firstgit rebase directly before invoking this skillreview-diff before committing; this skill does not review code✅ Run from the main repo root on the main branch
❌ Do not run from inside a linked worktree — that's deliver-feature's job; the CWD becomes invalid when the worktree is later removed, causing all subsequent commands to fail
✅ Check all selected worktrees for dirty state before starting any merge ❌ Do not check each worktree immediately before merging it — the user would discover dirty worktrees mid-batch after some merges are already committed
✅ git merge --no-ff to preserve branch history
❌ Do not use git merge --squash or fast-forward — history would be lost
✅ Standard git push origin <main-branch>
❌ Never use --force or --force-with-lease on main
✅ Remove worktrees only after their merge AND push both succeeded ❌ Do not remove a worktree after merge but before push — the branch would be unreachable if push fails
✅ git branch -d (safe) and confirm with user first
❌ Never use git branch -D (force) — it can delete unmerged commits
Scenario: Two feature worktrees are ready to merge into main.
Execution:
# Step 1: Context — main repo root, main branch ✓
git rev-parse --git-dir # /repos/myapp/.git
git rev-parse --git-common-dir # /repos/myapp/.git (equal → main repo ✓)
git rev-parse --abbrev-ref HEAD # main
git rev-parse --show-toplevel # /repos/myapp
# Step 2: Main branch
git remote show origin | grep 'HEAD branch' # HEAD branch: main
# Step 3: Scan
git worktree list --porcelain
# (parsed) main: /repos/myapp
# /repos/myapp-auth feat/user-auth
# /repos/myapp-api feat/api-v2
# User selects: all
# Step 4: Pre-flight
git -C /repos/myapp-auth status --porcelain # (empty ✓)
git -C /repos/myapp-api status --porcelain # (empty ✓)
# Step 5: Merge + push — worktree 1
git pull origin main
git merge --no-ff feat/user-auth -m "Merge branch 'feat/user-auth' into main"
git push origin main
# Step 5: Merge + push — worktree 2
git pull origin main
git merge --no-ff feat/api-v2 -m "Merge branch 'feat/api-v2' into main"
git push origin main
# Step 6: Unified cleanup
pwd # /repos/myapp ✓
git worktree remove /repos/myapp-auth
git worktree remove /repos/myapp-api
# Step 7: Branch deletion — user selects all
git branch -d feat/user-auth
git branch -d feat/api-v2
Summary:
integrate-worktrees summary
──────────────────────────────────────────────────────────────────────────
Worktree Branch Merge Push Cleanup Branch
/repos/myapp-auth feat/user-auth ✓ ✓ ✓ deleted
/repos/myapp-api feat/api-v2 ✓ ✓ ✓ deleted
──────────────────────────────────────────────────────────────────────────
Main repo: /repos/myapp · Main branch: main · Remote: origin
Scenario: Three worktrees selected; two have uncommitted changes.
Execution:
# Step 4: Pre-flight
git -C /repos/myapp-auth status --porcelain # (empty ✓)
git -C /repos/myapp-api status --porcelain # M src/api.ts
git -C /repos/myapp-ui status --porcelain # ?? src/temp.log
Skill reports:
Pre-flight check — dirty worktrees (will be skipped):
/repos/myapp-api (feat/api-v2) — 1 uncommitted file(s)
/repos/myapp-ui (feat/dashboard) — 1 uncommitted file(s)
"Proceed with the remaining clean worktrees, or halt all? [continue / halt]"
User answers continue → only feat/user-auth is merged and cleaned up. The other two are untouched.
Summary:
integrate-worktrees summary
──────────────────────────────────────────────────────────────────────────
Worktree Branch Merge Push Cleanup Branch
/repos/myapp-auth feat/user-auth ✓ ✓ ✓ deleted
/repos/myapp-api feat/api-v2 skipped(dirty) — — —
/repos/myapp-ui feat/dashboard skipped(dirty) — — —
──────────────────────────────────────────────────────────────────────────
Scenario: Developer is in /repos/myapp-api on feat/api-v2 and runs integrate-worktrees by habit.
Execution:
# CWD: /repos/myapp-api
git rev-parse --git-dir # /repos/myapp/.git/worktrees/myapp-api
git rev-parse --git-common-dir # /repos/myapp/.git (differs from --git-dir → linked worktree, NOT main repo)
Skill halts:
"This skill must be run from the main repo, not from inside a worktree. Current location:
/repos/myapp-api. To deliver just the current worktree's branch, usedeliver-feature."
No git operations performed. Exit code non-zero.
If this skill produces incorrect behavior:
git rev-parse --git-dir differed from git rev-parse --git-common-dir), or while current branch was not main → rewind to Step 1, add the git-dir vs git-common-dir comparison + branch-equality guardsgit merge is attempted without first running git -C <path> status --porcelain for all selected worktrees → rewind to Step 4, complete all pre-flight checks before any mergegit worktree remove is called for a worktree with status failed → halt; only the <succeeded-list> is eligible for removal--force or --force-with-lease appears in a push command → substitute standard push; if that fails, halt and reportgit merge --no-ff runs without a preceding git pull origin <main-branch> → re-run from the pull stepgit rev-parse --git-dir equals git rev-parse --git-common-dir (main repo) AND current branch equals <main-branch> before proceedinggit worktree list --porcelain parsed; non-main entries presented to userall or index-based subset captured before any pre-flight checkgit -C <path> status --porcelain completed for every selected worktree firstgit pull origin <main-branch> ran immediately before each git merge --no-ffgit merge --no-ff confirmed; no fast-forward or squashsucceeded: only after git push returned 0 is a worktree added to <succeeded-list><succeeded-list>: git worktree remove never called for failed or skipped entriespwd matched <main-repo> before any git worktree remove-d: no -D flag in any branch deletion command; user confirmed each branch--force or --force-with-lease never appeared in any commanddevelopment
Generate an LLM agent test suite (golden cases, mock-LLM unit tests, evaluator harness) from an agent implementation and its agent-test contract. Use when an agent has no tests, or a contract exists but the test code is missing.
development
After code changes, auto-detect the project's build system and local deployment method for a given directory, then build the project and restart its locally-deployed environment (Docker Compose / systemd / process manager). Never assumes — asks only when detection is ambiguous. Caches detected commands per project in .cortex/redeploy-local.yaml; re-invocations on the same project skip re-scanning until signal files change, the cache expires (30 days), or the skill version bumps.
tools
Publish a NATS message conforming to a cross-team contract, using NATS MCP tools. Authors the contract on first use if missing. Reads project-level cache (.cortex/nats.yaml) to avoid re-prompting basics across sessions.
tools
Drain pending NATS messages from a producer contract via NATS MCP tools (default batch / drain-style). Applies Tolerant Reader semantics and per-message ack/nak/term, returning aggregated stats. Reads project-level cache (.cortex/nats.yaml) to avoid re-prompting.