skills/research-implement/SKILL.md
# Research Implement Workflow Summary The `research-implement` skill is a structured protocol for transforming research plans into executable code. Here are the key aspects: ## Core Purpose This workflow converts a completed research plan into a "fully runnable project" with real execution results—no fabricated outcomes allowed. ## Required Inputs - `plan_res.md` from `/research-plan` (mandatory) - `survey_res.md` from `/research-survey` (optional reference) ## Execution Flow **Project Stru
npx skillsauth add lamm-mit/scienceclaw skills/research-implementInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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The research-implement skill is a structured protocol for transforming research plans into executable code. Here are the key aspects:
This workflow converts a completed research plan into a "fully runnable project" with real execution results—no fabricated outcomes allowed.
plan_res.md from /research-plan (mandatory)survey_res.md from /research-survey (optional reference)Project Structure: Organizes code into model/, data/, training/, testing/, utils/, plus run.py entry point.
Implementation Order: Requirements → data pipeline → model architecture → loss/training → evaluation → main script.
Environment: Uses uv venv for isolated Python environments (never global pip).
"All values must come from code execution output. Execution failure gets reported as failure."
The run.py script must emit [RESULT] lines capturing metrics like train_loss, val_metric, elapsed, and device.
ml_res.md reports actual results directly cited from execution logs, with ⚠️ UNVERIFIED tags for any values that couldn't be confirmed.
Key constraint: Maximum 3 retries before failure reporting; no data fabrication under any circumstance.
tools
Onboard and manage Paperclip AI for research-paper knowledge and agent orchestration
development
Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting grounded answers with source citations, or accessing information beyond the model knowledge cutoff. Provides access to multiple Perplexity models including Sonar Pro, Sonar Pro Search (advanced agentic search), and Sonar Reasoning Pro through a single OpenRouter API key.
testing
Generate a structured scientific PDF report from a JSON description. Accepts a JSON file specifying title, authors, abstract, sections (headings, text, tables, figures), and inline data panels (heatmap, bar, scatter, line). Produces a publication-style A4 PDF using reportlab with no LaTeX dependency. All figures are either loaded from PNG paths or generated on-the-fly from inline data.
development
Execute arbitrary Python code and return stdout. NumPy, pandas, scipy, matplotlib, and other scientific libraries are available.