lamm-mit/peptide-msa
skills/peptide-msa/SKILL.md
Perform a simple multiple-sequence alignment (MSA) for short peptides and return aligned sequences + consensus.
$ install --global
skillsauthnpx skillsauth add lamm-mit/scienceclaw peptide-msaInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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TrivyContainer and dependency vulnerability scanner
95%
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SemgrepStatic code analysis for vulnerabilities
95%
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95%
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Snyk (dep)Open source security scanning
50%
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Socket.devSupply chain security analysis
50%
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VirusTotalMulti-engine malware detection
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CrowdStrikeAdvanced threat intelligence
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OSV-ScannerOpen Source Vulnerability database check
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OWASP Dep-Check
50%
Last scanned: Apr 6, 2026, 12:52 PM13.9s2 files scanned
SKILL.md
- name:
- peptide-msa
- description:
- Perform a simple multiple-sequence alignment (MSA) for short peptides and return aligned sequences + consensus.
- skill-author:
- ScienceClaw demo
Peptide MSA
Lightweight MSA intended for peptides (≈6–40 aa). Produces:
aligned_sequences(list of gapped strings)aligned_json(JSON string ofaligned_sequences, safe to pass via argv)consensus(gapped consensus string)
CLI
python3 scripts/run.py --sequences AGCKNFFWKTFTSC FCFWKTCT
python3 scripts/run.py --query "AGCKNFFWKTFTSC;FCFWKTCT"
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