skills/fabric/SKILL.md
Pattern-based analysis using Fabric's 242+ specialized prompts for summarizing papers and extracting insights
npx skillsauth add lamm-mit/scienceclaw fabricInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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Pattern-based analysis framework with 242+ specialized prompts (Fabric patterns) for summarizing papers, extracting insights, threat modeling, and content analysis. Executes Fabric CLI patterns against text input or file content for rapid structured analysis.
Fabric patterns are expert-crafted prompts that produce consistently structured outputs. Scientific patterns include: summarize, extract_wisdom, extract_insights, analyze_paper, create_summary, extract_main_idea, and many more.
# Summarize a scientific paper (paste text as input)
python3 skills/fabric/scripts/fabric_run.py \
--pattern summarize \
--input "Full paper text here..."
# Extract key insights from a paper
python3 skills/fabric/scripts/fabric_run.py \
--pattern extract_wisdom \
--input /path/to/paper.txt
# List all available patterns
python3 skills/fabric/scripts/fabric_run.py \
--pattern summarize \
--input "" \
--list-patterns
# Analyze a research paper for key contributions
python3 skills/fabric/scripts/fabric_run.py \
--pattern analyze_paper \
--input "Abstract: We present a novel CRISPR delivery method..."
{
"pattern": "extract_wisdom",
"output": "# SUMMARY\n\nThe paper presents...\n\n# IDEAS\n\n- Key insight 1\n- Key insight 2\n\n# QUOTES\n...",
"status": "success"
}
Install Fabric:
go install github.com/danielmiessler/fabric@latest
# or
pip install fabric-ai
Without Fabric installed, the tool lists available scientific patterns and provides guidance.
tools
Onboard and manage Paperclip AI for research-paper knowledge and agent orchestration
development
Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting grounded answers with source citations, or accessing information beyond the model knowledge cutoff. Provides access to multiple Perplexity models including Sonar Pro, Sonar Pro Search (advanced agentic search), and Sonar Reasoning Pro through a single OpenRouter API key.
testing
Generate a structured scientific PDF report from a JSON description. Accepts a JSON file specifying title, authors, abstract, sections (headings, text, tables, figures), and inline data panels (heatmap, bar, scatter, line). Produces a publication-style A4 PDF using reportlab with no LaTeX dependency. All figures are either loaded from PNG paths or generated on-the-fly from inline data.
development
Execute arbitrary Python code and return stdout. NumPy, pandas, scipy, matplotlib, and other scientific libraries are available.