business/data-analytics/data-visualization/SKILL.md
Create effective data visualizations with Python (matplotlib, seaborn, plotly). Use when building charts, choosing the right chart type for a dataset, creating publication-quality figures, or applying design principles like accessibility and color theory.
npx skillsauth add harsh040506/claude-code-unified-skill-plugin-library data-visualizationInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
3 of 9 scanners reported clean
Some scanners were skipped, did not run, or reported a non-clean status. Review each row below.
Chart selection guidance, Python visualization code patterns, design principles, and accessibility considerations for creating effective data visualizations.
| What You're Showing | Best Chart | Alternatives | |---|---|---| | Trend over time | Line chart | Area chart (if showing cumulative or composition) | | Comparison across categories | Vertical bar chart | Horizontal bar (many categories), lollipop chart | | Ranking | Horizontal bar chart | Dot plot, slope chart (comparing two periods) | | Part-to-whole composition | Stacked bar chart | Treemap (hierarchical), waffle chart | | Composition over time | Stacked area chart | 100% stacked bar (for proportion focus) | | Distribution | Histogram | Box plot (comparing groups), violin plot, strip plot | | Correlation (2 variables) | Scatter plot | Bubble chart (add 3rd variable as size) | | Correlation (many variables) | Heatmap (correlation matrix) | Pair plot | | Geographic patterns | Choropleth map | Bubble map, hex map | | Flow / process | Sankey diagram | Funnel chart (sequential stages) | | Relationship network | Network graph | Chord diagram | | Performance vs. target | Bullet chart | Gauge (single KPI only) | | Multiple KPIs at once | Small multiples | Dashboard with separate charts |
import matplotlib.pyplot as plt
import matplotlib.ticker as mticker
import seaborn as sns
import pandas as pd
import numpy as np
# Professional style setup
plt.style.use('seaborn-v0_8-whitegrid')
plt.rcParams.update({
'figure.figsize': (10, 6),
'figure.dpi': 150,
'font.size': 11,
'axes.titlesize': 14,
'axes.titleweight': 'bold',
'axes.labelsize': 11,
'xtick.labelsize': 10,
'ytick.labelsize': 10,
'legend.fontsize': 10,
'figure.titlesize': 16,
})
# Colorblind-friendly palettes
PALETTE_CATEGORICAL = ['#4C72B0', '#DD8452', '#55A868', '#C44E52', '#8172B3', '#937860']
PALETTE_SEQUENTIAL = 'YlOrRd'
PALETTE_DIVERGING = 'RdBu_r'
fig, ax = plt.subplots(figsize=(10, 6))
for label, group in df.groupby('category'):
ax.plot(group['date'], group['value'], label=label, linewidth=2)
ax.set_title('Metric Trend by Category', fontweight='bold')
ax.set_xlabel('Date')
ax.set_ylabel('Value')
ax.legend(loc='upper left', frameon=True)
ax.spines['top'].set_visible(False)
ax.spines['right'].set_visible(False)
# Format dates on x-axis
fig.autofmt_xdate()
plt.tight_layout()
plt.savefig('trend_chart.png', dpi=150, bbox_inches='tight')
fig, ax = plt.subplots(figsize=(10, 6))
# Sort by value for easy reading
df_sorted = df.sort_values('metric', ascending=True)
bars = ax.barh(df_sorted['category'], df_sorted['metric'], color=PALETTE_CATEGORICAL[0])
# Add value labels
for bar in bars:
width = bar.get_width()
ax.text(width + 0.5, bar.get_y() + bar.get_height()/2,
f'{width:,.0f}', ha='left', va='center', fontsize=10)
ax.set_title('Metric by Category (Ranked)', fontweight='bold')
ax.set_xlabel('Metric Value')
ax.spines['top'].set_visible(False)
ax.spines['right'].set_visible(False)
plt.tight_layout()
plt.savefig('bar_chart.png', dpi=150, bbox_inches='tight')
fig, ax = plt.subplots(figsize=(10, 6))
ax.hist(df['value'], bins=30, color=PALETTE_CATEGORICAL[0], edgecolor='white', alpha=0.8)
# Add mean and median lines
mean_val = df['value'].mean()
median_val = df['value'].median()
ax.axvline(mean_val, color='red', linestyle='--', linewidth=1.5, label=f'Mean: {mean_val:,.1f}')
ax.axvline(median_val, color='green', linestyle='--', linewidth=1.5, label=f'Median: {median_val:,.1f}')
ax.set_title('Distribution of Values', fontweight='bold')
ax.set_xlabel('Value')
ax.set_ylabel('Frequency')
ax.legend()
ax.spines['top'].set_visible(False)
ax.spines['right'].set_visible(False)
plt.tight_layout()
plt.savefig('histogram.png', dpi=150, bbox_inches='tight')
fig, ax = plt.subplots(figsize=(10, 8))
# Pivot data for heatmap format
pivot = df.pivot_table(index='row_dim', columns='col_dim', values='metric', aggfunc='sum')
sns.heatmap(pivot, annot=True, fmt=',.0f', cmap='YlOrRd',
linewidths=0.5, ax=ax, cbar_kws={'label': 'Metric Value'})
ax.set_title('Metric by Row Dimension and Column Dimension', fontweight='bold')
ax.set_xlabel('Column Dimension')
ax.set_ylabel('Row Dimension')
plt.tight_layout()
plt.savefig('heatmap.png', dpi=150, bbox_inches='tight')
categories = df['category'].unique()
n_cats = len(categories)
n_cols = min(3, n_cats)
n_rows = (n_cats + n_cols - 1) // n_cols
fig, axes = plt.subplots(n_rows, n_cols, figsize=(5*n_cols, 4*n_rows), sharex=True, sharey=True)
axes = axes.flatten() if n_cats > 1 else [axes]
for i, cat in enumerate(categories):
ax = axes[i]
subset = df[df['category'] == cat]
ax.plot(subset['date'], subset['value'], color=PALETTE_CATEGORICAL[i % len(PALETTE_CATEGORICAL)])
ax.set_title(cat, fontsize=12)
ax.spines['top'].set_visible(False)
ax.spines['right'].set_visible(False)
# Hide empty subplots
for j in range(i+1, len(axes)):
axes[j].set_visible(False)
fig.suptitle('Trends by Category', fontsize=14, fontweight='bold', y=1.02)
plt.tight_layout()
plt.savefig('small_multiples.png', dpi=150, bbox_inches='tight')
def format_number(val, format_type='number'):
"""Format numbers for chart labels."""
if format_type == 'currency':
if abs(val) >= 1e9:
return f'${val/1e9:.1f}B'
elif abs(val) >= 1e6:
return f'${val/1e6:.1f}M'
elif abs(val) >= 1e3:
return f'${val/1e3:.1f}K'
else:
return f'${val:,.0f}'
elif format_type == 'percent':
return f'{val:.1f}%'
elif format_type == 'number':
if abs(val) >= 1e9:
return f'{val/1e9:.1f}B'
elif abs(val) >= 1e6:
return f'{val/1e6:.1f}M'
elif abs(val) >= 1e3:
return f'{val/1e3:.1f}K'
else:
return f'{val:,.0f}'
return str(val)
# Usage with axis formatter
ax.yaxis.set_major_formatter(mticker.FuncFormatter(lambda x, p: format_number(x, 'currency')))
import plotly.express as px
import plotly.graph_objects as go
# Simple interactive line chart
fig = px.line(df, x='date', y='value', color='category',
title='Interactive Metric Trend',
labels={'value': 'Metric Value', 'date': 'Date'})
fig.update_layout(hovermode='x unified')
fig.write_html('interactive_chart.html')
fig.show()
# Interactive scatter with hover data
fig = px.scatter(df, x='metric_a', y='metric_b', color='category',
size='size_metric', hover_data=['name', 'detail_field'],
title='Correlation Analysis')
fig.show()
sns.color_palette("colorblind")Before sharing a visualization:
testing
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.
tools
Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with scANVI/scArches, (7) RNA velocity with veloVI, or (8) any deep learning-based single-cell method. Triggers include mentions of scVI, scANVI, totalVI, PeakVI, MultiVI, DestVI, veloVI, sysVI, scArches, variational autoencoder, VAE, batch correction, data integration, multi-modal, CITE-seq, multiome, reference mapping, latent space.
testing
This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a new research idea, work through a project problem, evaluate project risks, plan research strategy, navigate decision trees, or get help choosing what scientific problem to work on. Typical requests include "I have an idea for a project", "I'm stuck on my research", "help me evaluate this project", "what should I work on", or "I need strategic advice about my research".
development
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.