engineering/advanced-ml-engineering/skills/architecture-search/SKILL.md
This skill should be used when the user asks about "neural architecture search", "NAS", "architecture design", "model selection", "Pareto analysis", "proxy metrics", "zero-cost NAS", "search space design", "DARTS", "ENAS", "EfficientNet", "architecture efficiency", "FLOP count", "parameter count", "model capacity", or when deciding which model family to use for a given task and constraint set.
npx skillsauth add harsh040506/claude-code-unified-skill-plugin-library architecture-searchInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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Provides systematic methodology for neural architecture search, candidate evaluation using proxy metrics, and Pareto-front analysis to balance accuracy against deployment constraints.
Use domain expertise to select from known architecture families:
When to use: Dataset is small, domain is well-understood, latency constraint is tight.
Evaluate architectures without training using proxy signals computed in seconds:
When to use: Tight time budget (< 1 hour), many candidates to screen.
Relax the discrete architecture search to a continuous optimization:
When to use: Custom search space, sufficient compute (DARTS requires ~4 GPU days).
When to use: Largest compute budget, maximum potential for novel architectures.
For each candidate architecture, evaluate on two axes:
A candidate is Pareto-optimal if no other candidate is strictly better on both axes simultaneously.
Selection rules:
See references/nas-algorithms.md for DARTS, ENAS, and evolutionary search implementation details.
See references/search-spaces.md for domain-specific search space definitions and operator libraries.
Quick estimation formulas:
Parameters:
Use these to quickly screen candidate architectures before running any training.
testing
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.
tools
Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with scANVI/scArches, (7) RNA velocity with veloVI, or (8) any deep learning-based single-cell method. Triggers include mentions of scVI, scANVI, totalVI, PeakVI, MultiVI, DestVI, veloVI, sysVI, scArches, variational autoencoder, VAE, batch correction, data integration, multi-modal, CITE-seq, multiome, reference mapping, latent space.
testing
This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a new research idea, work through a project problem, evaluate project risks, plan research strategy, navigate decision trees, or get help choosing what scientific problem to work on. Typical requests include "I have an idea for a project", "I'm stuck on my research", "help me evaluate this project", "what should I work on", or "I need strategic advice about my research".
development
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.