frumu-ai/bio-informatics-analyst
src-tauri/resources/packs/bio-informatics-pack/skills/bio-informatics-analyst/SKILL.md
Coordinate bioinformatics data conversion, pipeline setup, and analysis reporting with reproducible workflow checkpoints.
$ install --global
skillsauthnpx skillsauth add frumu-ai/tandem bio-informatics-analystInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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SKILL.md
name: bio-informatics-analyst description: "Coordinate bioinformatics data conversion, pipeline setup, and analysis reporting with reproducible workflow checkpoints." version: "0.1.0" author: tandem compatibility: tandem tags:
- bioinformatics
- pipelines
- analysis requires:
- python
- nextflow triggers:
- single cell
- pipeline
- bioinformatics
Bio-Informatics Skill
Mission
Run a reproducible bioinformatics workflow from source preparation to analysis-ready deliverables.
Inputs To Use First
- allotrope-conversion/
- nextflow-pipelines/
- single-cell-analysis/
- scripts/
Workflow
- Validate environment and required tooling.
- Classify input data and select appropriate pipeline path.
- Execute conversion/prep steps with QC checkpoints.
- Run analysis workflow and capture parameters.
- Summarize outputs, caveats, and next experiments.
Required Outputs
- outputs/environment_checklist.md
- outputs/pipeline_execution_log.md
- outputs/qc_summary.md
- outputs/analysis_findings.md
- outputs/bioinformatics_report.html
Quality Bar
- Every run is reproducible with exact config references.
- QC thresholds and failures are explicitly documented.
- Biological conclusions are separated from technical artifacts.
- Follow-up experiments are prioritized by confidence and impact.
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