brycewang-stanford/review-r
skills/14-luischanci-claude-code-research-starter/dot-claude/skills/review-r/SKILL.md
Run the R code review protocol on R scripts. Checks code quality, reproducibility, domain correctness, and professional standards. Produces a report without editing files.
$ install --global
skillsauthnpx skillsauth add brycewang-stanford/Awesome-Agent-Skills-for-Empirical-Research review-rInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
Security Scan Results
3 of 9 scanners reported clean
Some scanners were skipped, did not run, or reported a non-clean status. Review each row below.
3
Scanners Passed
9
Scanners in report
Clean
TrivyContainer and dependency vulnerability scanner
95%
Clean
SemgrepStatic code analysis for vulnerabilities
95%
Clean
mcp-scan (Snyk)Model Context Protocol security validation
95%
Skipped
Snyk (dep)Open source security scanning
50%
Skipped
Socket.devSupply chain security analysis
50%
Skipped
VirusTotalMulti-engine malware detection
50%
Skipped
CrowdStrikeAdvanced threat intelligence
50%
Skipped
OSV-ScannerOpen Source Vulnerability database check
50%
Skipped
OWASP Dep-Check
50%
Last scanned: Apr 24, 2026, 8:34 PM0.4s1 file scanned
SKILL.md
- name:
- review-r
- description:
- Run the R code review protocol on R scripts. Checks code quality, reproducibility, domain correctness, and professional standards. Produces a report without editing files.
- disable-model-invocation:
- true
- argument-hint:
- [filename or 'all']
- allowed-tools:
- ["Read", "Grep", "Glob", "Write", "Task"]
Review R Code
Run a comprehensive R code review on the specified script(s). Do NOT edit any R source files -- produce a report only.
Steps
-
Identify target: Use
$ARGUMENTSto find the R file(s). Ifall, scan all.Rfiles inscripts/and project subdirectories. -
Launch r-reviewer agent following the full protocol from
.claude/agents/r-reviewer.md. -
Read standards from
.claude/rules/r-code-conventions.md. -
Check 10 categories: Structure & Header, Console Output Hygiene, Reproducibility, Function Design, Domain Correctness, Figure Quality, RDS Data Pattern, Comment Quality, Error Handling, Professional Polish.
-
Save report to
quality_reports/[script_name]_r_review.md. -
Present summary: Total issues per script, severity breakdown (Critical/High/Medium/Low), top 3 critical issues.
Important
- NEVER edit source files. Report only.
- Prioritize correctness over style.
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