skills/43-wentorai-research-plugins/skills/domains/ai-ml/llm-evaluation-guide/SKILL.md
Evaluate and benchmark large language models for research applications
npx skillsauth add brycewang-stanford/Awesome-Agent-Skills-for-Empirical-Research llm-evaluation-guideInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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A skill for evaluating and benchmarking large language models (LLMs) in research settings. Covers automatic metrics, human evaluation protocols, benchmark suites, evaluation pitfalls, and best practices for reporting LLM performance.
1. Intrinsic evaluation:
Measures model quality on its own terms
- Perplexity, likelihood, calibration
- Useful for comparing architectures and training procedures
2. Extrinsic evaluation:
Measures model quality on downstream tasks
- Task-specific benchmarks (QA, summarization, classification)
- Closer to real-world usefulness
3. Human evaluation:
Human judges rate model outputs
- Fluency, correctness, helpfulness, safety
- Gold standard but expensive and slow
| Task | Metric | Description | |------|--------|-------------| | Language modeling | Perplexity | Lower is better; measures prediction quality | | Machine translation | BLEU, COMET | N-gram overlap; learned quality estimation | | Summarization | ROUGE-1/2/L | Recall of n-grams against reference | | Question answering | Exact Match, F1 | Token-level match against reference answer | | Classification | Accuracy, F1 | Standard classification metrics | | Generation quality | BERTScore | Semantic similarity via embeddings | | Factuality | FActScore | Proportion of atomic facts supported by evidence |
from collections import Counter
import math
def compute_bleu(reference: list[str], hypothesis: list[str],
max_n: int = 4) -> float:
"""
Compute corpus-level BLEU score (simplified).
Args:
reference: List of reference token sequences
hypothesis: List of hypothesis token sequences
max_n: Maximum n-gram order
"""
precisions = []
for n in range(1, max_n + 1):
num = 0
den = 0
for ref_tokens, hyp_tokens in zip(reference, hypothesis):
ref_ngrams = Counter(
tuple(ref_tokens[i:i+n]) for i in range(len(ref_tokens) - n + 1)
)
hyp_ngrams = Counter(
tuple(hyp_tokens[i:i+n]) for i in range(len(hyp_tokens) - n + 1)
)
clipped = {ng: min(c, ref_ngrams.get(ng, 0))
for ng, c in hyp_ngrams.items()}
num += sum(clipped.values())
den += max(sum(hyp_ngrams.values()), 1)
precisions.append(num / max(den, 1))
# Brevity penalty
ref_len = sum(len(r) for r in reference)
hyp_len = sum(len(h) for h in hypothesis)
bp = math.exp(1 - ref_len / max(hyp_len, 1)) if hyp_len < ref_len else 1.0
# Geometric mean of precisions
log_avg = sum(math.log(max(p, 1e-10)) for p in precisions) / max_n
return bp * math.exp(log_avg)
General knowledge and reasoning:
- MMLU (Massive Multitask Language Understanding): 57 subjects, MCQ
- HellaSwag: Commonsense sentence completion
- ARC (AI2 Reasoning Challenge): Science questions
- WinoGrande: Coreference resolution / commonsense
Coding:
- HumanEval: Python function completion (pass@k)
- MBPP: Mostly basic Python problems
- SWE-bench: Real-world software engineering tasks
Math:
- GSM8K: Grade school math word problems
- MATH: Competition-level mathematics
Safety and alignment:
- TruthfulQA: Resistance to common misconceptions
- BBQ (Bias Benchmark for QA): Social bias in QA
- RealToxicityPrompts: Tendency to generate toxic text
Instruction following:
- MT-Bench: Multi-turn conversation quality (LLM-as-judge)
- AlpacaEval: Instruction-following quality
- Chatbot Arena: ELO-based human preference ranking
def design_human_eval(task: str, n_annotators: int = 3,
n_examples: int = 200) -> dict:
"""
Design a human evaluation protocol for LLM outputs.
Args:
task: The task being evaluated
n_annotators: Number of independent annotators per example
n_examples: Number of examples to evaluate
"""
return {
"task": task,
"n_annotators": n_annotators,
"n_examples": n_examples,
"criteria": [
{"name": "Fluency", "scale": "1-5",
"description": "Is the text grammatically correct and natural?"},
{"name": "Relevance", "scale": "1-5",
"description": "Does the output address the input/question?"},
{"name": "Correctness", "scale": "1-5",
"description": "Is the factual content accurate?"},
{"name": "Helpfulness", "scale": "1-5",
"description": "Would a user find this response useful?"}
],
"agreement_metric": "Krippendorff's alpha (ordinal)",
"presentation": "Randomize model order; blind annotators to model identity",
"calibration": "Have all annotators rate 20 shared examples first",
"cost_estimate": f"~{n_examples * n_annotators * 0.50:.0f} USD at typical rates"
}
1. Data contamination:
Test data may appear in the LLM's training set.
Mitigation: Use held-out datasets, check for contamination,
create new test sets.
2. Metric gaming:
High BLEU does not mean high quality; ROUGE rewards verbosity.
Mitigation: Use multiple metrics and human evaluation.
3. Cherry-picking examples:
Showing only best-case outputs misrepresents model capabilities.
Mitigation: Report aggregate metrics over full test sets.
4. Ignoring variance:
LLM outputs vary with temperature and random seeds.
Mitigation: Report mean and standard deviation over multiple runs.
5. Unfair comparisons:
Comparing models with different prompt formats or few-shot counts.
Mitigation: Standardize prompts and report all hyperparameters.
When publishing LLM evaluation results, report: model name and version, parameter count and architecture, evaluation dataset with version number, exact prompts used (include in appendix), number of few-shot examples, decoding parameters (temperature, top-p, max tokens), multiple metrics (not just one), confidence intervals or significance tests, and hardware and inference cost where relevant.
tools
Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening, citation-checking, and paper writing. Use when the user asks "what tool should I use to..." OR "install/run/use <tool> to ..." for research/lit-review work: automating a survey or related-work section, PDF→Markdown extraction for LLMs (MinerU/marker/docling), PRISMA / systematic review (ASReview), citation-backed Q&A over PDFs (PaperQA2), wiring papers into Claude/Cursor via MCP (arxiv/paper-search/zotero servers), or chatting with a Zotero library. Ships a launcher (scripts/litrun.py) that installs each tool in an isolated venv and runs it. Curated catalog of 70+ vetted projects. 支持中英文(用于「文献综述工具选型」与「一键安装/运行」)。
development
Route empirical-research requests through the Auto-Empirical Research Skills catalog when this whole repository is installed as one skill in Codex, CodeBuddy, Claude Code, or another IDE. Use to choose and load the right vendored AERS skill for causal inference, econometrics, replication, data acquisition, manuscript writing, peer review and referee responses, citation checking, de-AIGC editing, or full empirical-paper workflows without reading the entire repository at once.
documentation
Use when the project collects primary data or runs a field, lab, or survey experiment, before the intervention begins — write the pre-analysis plan, size the sample from a power calculation, and register with the AEA RCT Registry. Apply after the design is chosen in aer-identification and before any outcome data are seen.
tools
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