skills/43-wentorai-research-plugins/skills/domains/cs/code-llm-papers-guide/SKILL.md
Survey and paper collection on LLMs for code generation
npx skillsauth add brycewang-stanford/Awesome-Agent-Skills-for-Empirical-Research code-llm-papers-guideInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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This curated collection covers LLMs for code — from foundational models (Codex, CodeGen, StarCoder) through code generation, completion, repair, translation, and understanding. Accompanies a TMLR survey paper providing systematic categorization. Tracks 500+ papers across pre-training, fine-tuning, evaluation, and application of code-focused language models.
Code LLMs
├── Pre-training
│ ├── Encoder-only (CodeBERT, GraphCodeBERT)
│ ├── Decoder-only (Codex, CodeGen, StarCoder, DeepSeek-Coder)
│ └── Encoder-Decoder (CodeT5, PLBART)
├── Fine-tuning & Alignment
│ ├── Instruction tuning (WizardCoder, Magicoder)
│ ├── RLHF for code (CodeRL)
│ └── Self-play (AlphaCode)
├── Applications
│ ├── Code generation (NL → Code)
│ ├── Code completion (infilling)
│ ├── Code repair (bug fixing)
│ ├── Code translation (language conversion)
│ ├── Code summarization (Code → NL)
│ ├── Test generation
│ └── Code review
└── Evaluation
├── Benchmarks (HumanEval, MBPP, SWE-bench)
├── Metrics (pass@k, CodeBLEU)
└── Security analysis
| Model | Year | Organization | Parameters | Key Innovation | |-------|------|-------------|------------|----------------| | CodeBERT | 2020 | Microsoft | 125M | Bimodal NL-PL pre-training | | Codex | 2021 | OpenAI | 12B | GPT-3 fine-tuned on GitHub | | AlphaCode | 2022 | DeepMind | 41B | Competitive programming | | StarCoder | 2023 | BigCode | 15B | Fill-in-the-middle, 1T tokens | | CodeLlama | 2023 | Meta | 34B | Llama 2 + code specialization | | DeepSeek-Coder | 2024 | DeepSeek | 33B | 2T token project-level training | | Qwen2.5-Coder | 2024 | Alibaba | 32B | 5.5T tokens, multi-language |
# Track model performance on HumanEval
humaneval_scores = {
"GPT-4": {"pass_at_1": 67.0, "pass_at_10": 86.0},
"Claude 3.5 Sonnet": {"pass_at_1": 64.0},
"DeepSeek-Coder-33B": {"pass_at_1": 56.1},
"CodeLlama-34B": {"pass_at_1": 48.8},
"StarCoder2-15B": {"pass_at_1": 46.3},
"GPT-3.5-Turbo": {"pass_at_1": 48.1},
}
print(f"{'Model':<25} {'pass@1':>8} {'pass@10':>8}")
print("-" * 43)
for model, scores in sorted(
humaneval_scores.items(),
key=lambda x: x[1].get("pass_at_1", 0),
reverse=True,
):
p1 = scores.get("pass_at_1", "—")
p10 = scores.get("pass_at_10", "—")
print(f"{model:<25} {str(p1):>8} {str(p10):>8}")
### Active Areas (2024-2025)
1. **Repository-level generation** — Understanding full codebases
2. **Agentic coding** — LLMs using tools (debugger, terminal)
3. **Formal verification** — Proving correctness of generated code
4. **Multi-language** — Cross-language transfer and translation
5. **Security** — Detecting and avoiding vulnerable code
6. **Long context** — Processing large codebases (100k+ tokens)
7. **Code editing** — Natural language instructions for code changes
import arxiv
def find_code_llm_papers(topic="code generation", max_results=20):
"""Find recent Code LLM papers on arXiv."""
query = f"abs:{topic} AND (abs:large language model OR abs:LLM)"
search = arxiv.Search(
query=query,
max_results=max_results,
sort_by=arxiv.SortCriterion.SubmittedDate,
)
for result in search.results():
print(f"[{result.published.strftime('%Y-%m-%d')}] "
f"{result.title}")
find_code_llm_papers("code generation")
find_code_llm_papers("automated program repair")
tools
Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening, citation-checking, and paper writing. Use when the user asks "what tool should I use to..." OR "install/run/use <tool> to ..." for research/lit-review work: automating a survey or related-work section, PDF→Markdown extraction for LLMs (MinerU/marker/docling), PRISMA / systematic review (ASReview), citation-backed Q&A over PDFs (PaperQA2), wiring papers into Claude/Cursor via MCP (arxiv/paper-search/zotero servers), or chatting with a Zotero library. Ships a launcher (scripts/litrun.py) that installs each tool in an isolated venv and runs it. Curated catalog of 70+ vetted projects. 支持中英文(用于「文献综述工具选型」与「一键安装/运行」)。
development
Route empirical-research requests through the Auto-Empirical Research Skills catalog when this whole repository is installed as one skill in Codex, CodeBuddy, Claude Code, or another IDE. Use to choose and load the right vendored AERS skill for causal inference, econometrics, replication, data acquisition, manuscript writing, peer review and referee responses, citation checking, de-AIGC editing, or full empirical-paper workflows without reading the entire repository at once.
documentation
Use when the project collects primary data or runs a field, lab, or survey experiment, before the intervention begins — write the pre-analysis plan, size the sample from a power calculation, and register with the AEA RCT Registry. Apply after the design is chosen in aer-identification and before any outcome data are seen.
tools
Guide economists to authoritative data sources with explicit, confirmed data specifications before retrieval; interfaces with Playwright MCP to navigate portals and extract real data, not articles about data.