skills/43-wentorai-research-plugins/skills/domains/biomedical/clinical-dialogue-agents-guide/SKILL.md
Papers on AI agents for clinical dialogue and medical QA
npx skillsauth add brycewang-stanford/Awesome-Agent-Skills-for-Empirical-Research clinical-dialogue-agents-guideInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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A curated collection of papers on AI agents for clinical dialogue — systems that conduct patient interviews, perform differential diagnosis, explain medical information, and support clinical decision-making through conversation. Covers medical QA benchmarks, patient simulation, clinical reasoning chains, and safety considerations unique to healthcare AI.
Agentic Clinical Dialogue
├── Patient-Facing Agents
│ ├── Symptom checkers
│ ├── Triage systems
│ ├── Health information
│ └── Follow-up management
├── Clinician-Facing Agents
│ ├── Diagnostic support
│ ├── Treatment recommendation
│ ├── Clinical documentation
│ └── Literature integration
├── Clinical Reasoning
│ ├── Differential diagnosis
│ ├── History taking
│ ├── Physical exam interpretation
│ └── Test ordering
├── Patient Simulation
│ ├── Standardized patients (SP)
│ ├── Medical education
│ └── Agent evaluation
└── Safety & Ethics
├── Hallucination in medicine
├── Bias in clinical AI
├── Liability frameworks
└── Informed consent
| System | Focus | Approach | |--------|-------|----------| | AMIE | Diagnostic dialogue | LLM with clinical reasoning | | Med-PaLM | Medical QA | Finetuned on medical data | | ChatDoctor | Patient consultation | LLaMA + medical knowledge | | AgentClinic | Clinical evaluation | Simulated clinical encounters | | ClinicalAgent | Decision support | Multi-step clinical reasoning |
benchmarks = {
"MedQA (USMLE)": {
"task": "US Medical Licensing Exam questions",
"size": "11,450 questions",
"metric": "Accuracy",
},
"PubMedQA": {
"task": "Biomedical yes/no/maybe QA",
"size": "1,000 expert-labeled",
"metric": "Accuracy",
},
"AgentClinic": {
"task": "Simulated clinical encounters",
"size": "Various patient scenarios",
"metric": "Diagnostic accuracy + safety",
},
"MedMCQA": {
"task": "Indian medical entrance MCQs",
"size": "194k questions",
"metric": "Accuracy",
},
"HealthSearchQA": {
"task": "Consumer health search questions",
"size": "3,375 questions",
"metric": "Expert evaluation",
},
}
for name, info in benchmarks.items():
print(f"\n{name}:")
print(f" Task: {info['task']}")
print(f" Size: {info['size']}")
### Critical Safety Issues
1. **Hallucination** — Fabricated medical facts are dangerous
2. **Scope limitations** — AI must know when to defer to human
3. **Emergency recognition** — Must identify urgent situations
4. **Bias** — Demographic biases in training data
5. **Liability** — Legal framework for AI medical advice
6. **Privacy** — Patient data protection (HIPAA compliance)
### Safety Patterns
- Always recommend consulting healthcare providers
- Flag emergency symptoms immediately
- Disclose AI nature to patients
- Log all interactions for audit
- Implement uncertainty quantification
### Foundations
1. AMIE: "Towards Conversational Diagnostic AI" (Google, 2024)
2. Med-PaLM 2: "Expert-level medical QA" (Google, 2023)
3. "Evaluating LLMs in Clinical Dialogue" (Survey, 2024)
### Clinical Reasoning
4. "Chain-of-Diagnosis" (Clinical CoT, 2024)
5. "AgentClinic: Evaluating Clinical Agents" (2024)
6. "Simulated Patient Encounters with LLMs" (2024)
### Safety
7. "Hallucination in Medical AI" (Survey, 2024)
8. "Red Teaming Medical LLMs" (2024)
tools
Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening, citation-checking, and paper writing. Use when the user asks "what tool should I use to..." OR "install/run/use <tool> to ..." for research/lit-review work: automating a survey or related-work section, PDF→Markdown extraction for LLMs (MinerU/marker/docling), PRISMA / systematic review (ASReview), citation-backed Q&A over PDFs (PaperQA2), wiring papers into Claude/Cursor via MCP (arxiv/paper-search/zotero servers), or chatting with a Zotero library. Ships a launcher (scripts/litrun.py) that installs each tool in an isolated venv and runs it. Curated catalog of 70+ vetted projects. 支持中英文(用于「文献综述工具选型」与「一键安装/运行」)。
development
Route empirical-research requests through the Auto-Empirical Research Skills catalog when this whole repository is installed as one skill in Codex, CodeBuddy, Claude Code, or another IDE. Use to choose and load the right vendored AERS skill for causal inference, econometrics, replication, data acquisition, manuscript writing, peer review and referee responses, citation checking, de-AIGC editing, or full empirical-paper workflows without reading the entire repository at once.
documentation
Use when the project collects primary data or runs a field, lab, or survey experiment, before the intervention begins — write the pre-analysis plan, size the sample from a power calculation, and register with the AEA RCT Registry. Apply after the design is chosen in aer-identification and before any outcome data are seen.
tools
Guide economists to authoritative data sources with explicit, confirmed data specifications before retrieval; interfaces with Playwright MCP to navigate portals and extract real data, not articles about data.