skills/43-wentorai-research-plugins/skills/domains/biomedical/SKILL.md
24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides.
npx skillsauth add brycewang-stanford/Awesome-Agent-Skills-for-Empirical-Research biomedical-skillsInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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Select the skill matching the user's need, then read its SKILL.md.
| Skill | Description | |-------|-------------| | alphafold-api | Query AlphaFold protein structure predictions by UniProt accession | | bioagents-guide | AI scientist framework for autonomous biological research workflows | | biothings-api | Query gene, variant, and drug annotations via BioThings APIs | | clawbio-guide | OpenClaw bioinformatics skill library for genomics pipelines | | clinical-dialogue-agents-guide | Papers on AI agents for clinical dialogue and medical QA | | clinical-research-guide | Design clinical studies and report using CONSORT, STROBE guidelines | | clinicaltrials-api | Clinical trial registry database search API | | clinicaltrials-api-v2 | Search and analyze clinical trials via the ClinicalTrials.gov v2 API | | ena-sequence-api | Access nucleotide sequence data from the European Nucleotide Archive | | enrichr-api | Perform gene set enrichment analysis using the Enrichr API | | ensembl-rest-api | Query gene, sequence, and variant data via the Ensembl REST API | | epidemiology-guide | Epidemiological study designs, measures of association, and public health ana... | | genomas-guide | Automate gene expression analysis with the GenoMAS multi-agent system | | genomics-analysis-guide | Workflows for RNA-seq, GWAS, and variant calling in genomic research | | genotex-benchmark-guide | Benchmark for LLM agents on gene expression data analysis | | med-researcher-guide | Multi-agent system for biomedical literature review and synthesis | | med-researcher-r1-guide | Medical deep research agent with reasoning chain analysis | | medgeclaw-guide | AI research assistant for biomedicine, RNA-seq, and drug discovery | | medical-data-api | Access FDA drug data and WHO global health statistics for research | | medical-imaging-guide | Medical image analysis with deep learning for research applications | | ncbi-blast-api | Run sequence similarity searches via the NCBI BLAST REST API | | ncbi-datasets-api | Access genomes, genes, and taxonomy data via NCBI Datasets v2 API | | pdb-structure-api | Search and retrieve 3D protein structures from the RCSB Protein Data Bank | | quickgo-api | Browse and search Gene Ontology annotations via the QuickGO API |
tools
Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening, citation-checking, and paper writing. Use when the user asks "what tool should I use to..." OR "install/run/use <tool> to ..." for research/lit-review work: automating a survey or related-work section, PDF→Markdown extraction for LLMs (MinerU/marker/docling), PRISMA / systematic review (ASReview), citation-backed Q&A over PDFs (PaperQA2), wiring papers into Claude/Cursor via MCP (arxiv/paper-search/zotero servers), or chatting with a Zotero library. Ships a launcher (scripts/litrun.py) that installs each tool in an isolated venv and runs it. Curated catalog of 70+ vetted projects. 支持中英文(用于「文献综述工具选型」与「一键安装/运行」)。
development
Route empirical-research requests through the Auto-Empirical Research Skills catalog when this whole repository is installed as one skill in Codex, CodeBuddy, Claude Code, or another IDE. Use to choose and load the right vendored AERS skill for causal inference, econometrics, replication, data acquisition, manuscript writing, peer review and referee responses, citation checking, de-AIGC editing, or full empirical-paper workflows without reading the entire repository at once.
documentation
Use when the project collects primary data or runs a field, lab, or survey experiment, before the intervention begins — write the pre-analysis plan, size the sample from a power calculation, and register with the AEA RCT Registry. Apply after the design is chosen in aer-identification and before any outcome data are seen.
tools
Guide economists to authoritative data sources with explicit, confirmed data specifications before retrieval; interfaces with Playwright MCP to navigate portals and extract real data, not articles about data.