skills/43-wentorai-research-plugins/skills/domains/biomedical/SKILL.md
24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides.
npx skillsauth add brycewang-stanford/Awesome-Agent-Skills-for-Empirical-Research biomedical-skillsInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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| Skill | Description | |-------|-------------| | alphafold-api | Query AlphaFold protein structure predictions by UniProt accession | | bioagents-guide | AI scientist framework for autonomous biological research workflows | | biothings-api | Query gene, variant, and drug annotations via BioThings APIs | | clawbio-guide | OpenClaw bioinformatics skill library for genomics pipelines | | clinical-dialogue-agents-guide | Papers on AI agents for clinical dialogue and medical QA | | clinical-research-guide | Design clinical studies and report using CONSORT, STROBE guidelines | | clinicaltrials-api | Clinical trial registry database search API | | clinicaltrials-api-v2 | Search and analyze clinical trials via the ClinicalTrials.gov v2 API | | ena-sequence-api | Access nucleotide sequence data from the European Nucleotide Archive | | enrichr-api | Perform gene set enrichment analysis using the Enrichr API | | ensembl-rest-api | Query gene, sequence, and variant data via the Ensembl REST API | | epidemiology-guide | Epidemiological study designs, measures of association, and public health ana... | | genomas-guide | Automate gene expression analysis with the GenoMAS multi-agent system | | genomics-analysis-guide | Workflows for RNA-seq, GWAS, and variant calling in genomic research | | genotex-benchmark-guide | Benchmark for LLM agents on gene expression data analysis | | med-researcher-guide | Multi-agent system for biomedical literature review and synthesis | | med-researcher-r1-guide | Medical deep research agent with reasoning chain analysis | | medgeclaw-guide | AI research assistant for biomedicine, RNA-seq, and drug discovery | | medical-data-api | Access FDA drug data and WHO global health statistics for research | | medical-imaging-guide | Medical image analysis with deep learning for research applications | | ncbi-blast-api | Run sequence similarity searches via the NCBI BLAST REST API | | ncbi-datasets-api | Access genomes, genes, and taxonomy data via NCBI Datasets v2 API | | pdb-structure-api | Search and retrieve 3D protein structures from the RCSB Protein Data Bank | | quickgo-api | Browse and search Gene Ontology annotations via the QuickGO API |
development
Conduct rigorous thematic analysis (TA) of qualitative data following Braun and Clarke's (2006) six-phase framework. Use whenever the user mentions 'thematic analysis', 'TA', 'Braun and Clarke', 'qualitative coding', 'identifying themes', or asks for help analysing interviews, focus groups, open-ended survey responses, or transcripts to identify patterns. Also trigger for questions about inductive vs theoretical coding, semantic vs latent themes, essentialist vs constructionist epistemology, building a thematic map, or writing up a qualitative findings section. Covers all six phases, the four upfront analytic decisions, the 15-point quality checklist, and the five common pitfalls. Produces a Word document write-up and an annotated thematic map. Does NOT cover IPA, grounded theory, discourse analysis, conversation analysis, or narrative analysis — use a different method for those.
development
Guide users through writing a systematic literature review (SLR) following the PRISMA 2020 framework. Use this skill whenever the user mentions 'systematic review', 'systematic literature review', 'SLR', 'PRISMA', 'PRISMA 2020', 'PRISMA flow diagram', 'PRISMA checklist', or asks for help writing, structuring, or auditing a literature review that follows reporting guidelines. Also trigger when the user asks about inclusion/exclusion criteria for a review, search strategies for databases like Scopus/WoS/PubMed, study selection processes, risk of bias assessment, or narrative synthesis for a review paper. This skill covers the full PRISMA 2020 checklist (27 items), produces a Word document manuscript in strict journal article format, generates an annotated PRISMA flow diagram, and enforces APA 7th Edition referencing throughout. It does NOT cover meta-analysis or statistical pooling. By Chuah Kee Man.
testing
Performs placebo-in-time sensitivity analysis with hierarchical null model and optional Bayesian assurance. Use when checking model robustness, verifying lack of pre-intervention effects, or estimating study power.
data-ai
Fit, summarize, plot, and interpret a chosen CausalPy experiment. Use after the causal method has been selected, including when configuring PyMC/sklearn models and scale-aware custom priors.