brycewang-stanford/bib-check
skills/29-quarcs-lab-project20XXy/dot-claude/skills/bib-check/SKILL.md
Cross-checks citation keys in index.qmd against references.bib, reporting missing, orphaned, and duplicate entries. Use when verifying citations.
$ install --global
skillsauthnpx skillsauth add brycewang-stanford/Awesome-Agent-Skills-for-Empirical-Research bib-checkInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
Security Scan Results
3 of 9 scanners reported clean
Some scanners were skipped, did not run, or reported a non-clean status. Review each row below.
3
Scanners Passed
9
Scanners in report
Clean
TrivyContainer and dependency vulnerability scanner
95%
Clean
SemgrepStatic code analysis for vulnerabilities
95%
Clean
mcp-scan (Snyk)Model Context Protocol security validation
95%
Skipped
Snyk (dep)Open source security scanning
50%
Skipped
Socket.devSupply chain security analysis
50%
Skipped
VirusTotalMulti-engine malware detection
50%
Skipped
CrowdStrikeAdvanced threat intelligence
50%
Skipped
OSV-ScannerOpen Source Vulnerability database check
50%
Skipped
OWASP Dep-Check
50%
Last scanned: Apr 30, 2026, 5:08 AM15.8s1 file scanned
SKILL.md
- name:
- bib-check
- description:
- Cross-checks citation keys in index.qmd against references.bib, reporting missing, orphaned, and duplicate entries. Use when verifying citations.
- allowed-tools:
- Bash, Read, Glob, Grep
Audit Citations and References
Cross-check all citation keys in the manuscript against references.bib and report mismatches.
Steps
-
Read
index.qmdand extract every citation key:- Narrative citations:
@key - Parenthetical citations:
[@key],[@key1; @key2] - Ignore email addresses and
@sec-,@fig-,@tbl-cross-references
- Narrative citations:
-
Read
references.biband extract every entry key (the identifier after@article{,@book{, etc.) -
Check for duplicate keys within
references.bib(same key defined more than once) -
Report three categories:
Errors — cited in manuscript but missing from
.bib:- List each missing key with the line number in
index.qmdwhere it appears - For each, suggest running
/project:cite <key>to add the entry
Orphaned — in
.bibbut never cited in manuscript:- List each unused key (informational, not necessarily a problem)
Duplicates — same key appears multiple times in
.bib:- List each duplicate with line numbers in
references.bib
- List each missing key with the line number in
-
Print a summary: total cited keys, total
.bibentries, errors, orphaned, duplicates
Error handling
- If
references.bibdoes not exist, report the error and stop. - If
index.qmdcontains no citations, report "No citations found" and stop.
Related Skills
brycewang-stanford/literature-review-tools
tools
VerifiedTrustedCommunity
Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening, citation-checking, and paper writing. Use when the user asks "what tool should I use to..." OR "install/run/use <tool> to ..." for research/lit-review work: automating a survey or related-work section, PDF→Markdown extraction for LLMs (MinerU/marker/docling), PRISMA / systematic review (ASReview), citation-backed Q&A over PDFs (PaperQA2), wiring papers into Claude/Cursor via MCP (arxiv/paper-search/zotero servers), or chatting with a Zotero library. Ships a launcher (scripts/litrun.py) that installs each tool in an isolated venv and runs it. Curated catalog of 70+ vetted projects. 支持中英文（用于「文献综述工具选型」与「一键安装/运行」）。
3,109SKILL.mdUpdated Jul 28, 2026
brycewang-stanford/auto-empirical-research-skills
development
VerifiedTrustedCommunity
Route empirical-research requests through the Auto-Empirical Research Skills catalog when this whole repository is installed as one skill in Codex, CodeBuddy, Claude Code, or another IDE. Use to choose and load the right vendored AERS skill for causal inference, econometrics, replication, data acquisition, manuscript writing, peer review and referee responses, citation checking, de-AIGC editing, or full empirical-paper workflows without reading the entire repository at once.
3,109SKILL.mdUpdated Jun 27, 2026
brycewang-stanford/aer-preregistration
documentation
VerifiedTrustedCommunity
Use when the project collects primary data or runs a field, lab, or survey experiment, before the intervention begins — write the pre-analysis plan, size the sample from a power calculation, and register with the AEA RCT Registry. Apply after the design is chosen in aer-identification and before any outcome data are seen.
3,021SKILL.mdUpdated Jul 23, 2026
brycewang-stanford/economist-data-skill
tools
VerifiedTrustedCommunity
Guide economists to authoritative data sources with explicit, confirmed data specifications before retrieval; interfaces with Playwright MCP to navigate portals and extract real data, not articles about data.
3,021SKILL.mdUpdated Jul 23, 2026