scientific-skills/Academic Writing/discussion-section-architect/SKILL.md
Structures and writes discussion sections for academic papers and research reports. Use when writing a discussion section, interpreting research results, connecting findings to existing literature, addressing study limitations, synthesizing conclusions, or drafting any part of an academic discussion. Helps researchers organize arguments, contextualize data, and produce clear, publication-ready discussion prose.
npx skillsauth add aipoch/medical-research-skills discussion-section-architectInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
3 of 9 scanners reported clean
Some scanners were skipped, did not run, or reported a non-clean status. Review each row below.
scripts/main.py.references/ for task-specific guidance.Python: 3.10+. Repository baseline for current packaged skills.Third-party packages: not explicitly version-pinned in this skill package. Add pinned versions if this skill needs stricter environment control.cd "20260318/scientific-skills/Academic Writing/discussion-section-architect"
python -m py_compile scripts/main.py
python scripts/main.py --help
Example run plan:
CONFIG block or documented parameters if the script uses fixed settings.python scripts/main.py with the validated inputs.See ## Workflow above for related details.
scripts/main.py.references/ contains supporting rules, prompts, or checklists.Use this command to verify that the packaged script entry point can be parsed before deeper execution.
python -m py_compile scripts/main.py
Use these concrete commands for validation. They are intentionally self-contained and avoid placeholder paths.
python -m py_compile scripts/main.py
python scripts/main.py --help
Example prompt input:
Results: Group A showed a 23% reduction in symptom severity (p=0.003) vs. control.
Hypothesis: Intervention would reduce symptom severity.
Task: Interpret this result for the discussion section.
Example output excerpt:
The 23% reduction in symptom severity (p=0.003) supports the primary hypothesis.
This effect size is clinically meaningful and consistent with the mechanistic
rationale proposed in the introduction...
Example:
Finding: Effect was stronger in older participants.
Literature: Smith et al. (2019) found age-moderated responses in a similar cohort.
Task: Connect finding to literature.
Output:
The age-moderated effect aligns with Smith et al. (2019), who reported attenuated
responses in younger adults. One possible explanation is differential receptor
sensitivity across age groups, as suggested by...
Draft a limitations subsection that is honest but does not undermine the contribution:
Limitation: [Describe constraint]
Impact: [How it affects interpretation]
Mitigation / Future direction: [How it could be addressed]
Generate a closing paragraph that:
1. Opening: Restate the research question and summarize the key finding (2–3 sentences).
2. Interpretation: Explain what the results mean mechanistically or theoretically.
3. Comparison to Literature: Agree/contrast with prior studies; explain divergences.
4. Implications: Theoretical contributions and/or practical applications.
5. Limitations: Honest scope boundaries with future directions.
6. Conclusion: Synthesis and forward-looking close.
Use this iterative workflow after generating an initial draft:
Step 1 — Draft: Generate the full discussion section using the structure above.
Step 2 — Check: Review against the checklist:
Step 3 — Revise: For each failed checklist item, revise only the affected paragraph(s).
Step 4 — Re-check: Re-run the checklist on revised paragraphs to confirm resolution before finalizing.
references/guide.md - Detailed documentationreferences/examples/ - Sample inputs and outputsSkill ID: 950 | Version: 1.0 | License: MIT
Every final response should make these items explicit when they are relevant:
scripts/main.py fails, report the failure point, summarize what still can be completed safely, and provide a manual fallback.This skill accepts requests that match the documented purpose of discussion-section-architect and include enough context to complete the workflow safely.
Do not continue the workflow when the request is out of scope, missing a critical input, or would require unsupported assumptions. Instead respond:
discussion-section-architectonly handles its documented workflow. Please provide the missing required inputs or switch to a more suitable skill.
Use the following fixed structure for non-trivial requests:
If the request is simple, you may compress the structure, but still keep assumptions and limits explicit when they affect correctness.
tools
Generates complete conventional oncology bulk-transcriptome biomarker and hub-gene research designs from a user-provided cancer type and study direction. Always use this skill whenever a user wants to design, plan, or build a tumor bioinformatics study centered on differential expression, prognostic filtering or risk modeling, PPI-based hub-gene prioritization, diagnostic/prognostic evaluation, clinical association, immune infiltration context, methylation context, and optional tissue or cell validation. Covers five study patterns (signature-first prognostic workflow, hub-gene-first biomarker workflow, hybrid signature-to-hub workflow, immune-context biomarker workflow, translational validation workflow) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path...
development
Generates complete conventional non-oncology bioinformatics research designs from a user-provided disease context, process-related gene family or biological theme, and validation direction. Use when a study centers on multi-dataset bulk transcriptome integration, DEG analysis, process-gene intersection, enrichment analysis, GSEA, PPI hub-gene prioritization, TF/miRNA regulatory networks, ROC-based biomarker evaluation, and immune infiltration analysis. Covers five study patterns (process-DEG discovery, enrichment/GSEA interpretation, hub-gene prioritization, regulatory-network and immune interpretation, multi-layer public validation) and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.
tools
Plans confounder control, variable adjustment logic, and bias mitigation strategies at the protocol stage for clinical, epidemiologic, translational, observational, and biomarker studies. Always use this skill when a user needs to identify major confounders, decide which variables should or should not be adjusted for, compare matching/stratification/weighting approaches, anticipate selection or measurement bias, or pressure-test a study design before execution. Focus on bias sensing, causal structure awareness, variable-role classification, and critical design review rather than generic statistical advice.
testing
Generates complete comparative network-toxicology research designs from a user-provided exposure pair, shared toxic phenotype, and validation direction. Use when a study centers on two related exposures under one outcome and needs target collection, shared-vs-specific target decomposition, enrichment, PPI hub prioritization, docking, optional transcriptomic cross-checks, and conservative mechanistic synthesis. Covers five study patterns and always outputs Lite / Standard / Advanced / Publication+ with a recommended primary plan, stepwise workflow, figure plan, validation hierarchy, minimal executable version, publication upgrade path, and strictly verified literature retrieval.