activeinferenceinstitute/gnn-mcp-protocol
src/mcp/SKILL.md
GNN Model Context Protocol processing and tool registration. Use when registering GNN operations as MCP tools, building MCP server configurations, or integrating GNN capabilities with LLM tool-use workflows.
$ install --global
skillsauthnpx skillsauth add activeinferenceinstitute/generalizednotationnotation gnn-mcp-protocolInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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SKILL.md
- name:
- gnn-mcp-protocol
- description:
- GNN Model Context Protocol processing and tool registration. Use when registering GNN operations as MCP tools, building MCP server configurations, or integrating GNN capabilities with LLM tool-use workflows.
GNN MCP Protocol (Step 21)
Purpose
Processes Model Context Protocol (MCP) configurations and registers GNN pipeline operations as MCP tools. Enables LLM agents to invoke GNN capabilities through standardized tool interfaces.
Key Commands
# Run MCP processing
python src/21_mcp.py --target-dir input/gnn_files --output-dir output --verbose
# As part of pipeline
python src/main.py --only-steps 21 --verbose
API
from mcp import (
MCP, MCPServer, MCPTool, MCPResource,
create_mcp_server, start_mcp_server,
register_tools, register_module_tools,
get_available_tools, list_available_tools,
list_available_resources, process_mcp,
get_mcp_instance, handle_mcp_request
)
# Process MCP step (used by pipeline)
process_mcp(target_dir, output_dir, verbose=True)
# Create and start MCP server
server = create_mcp_server()
start_mcp_server(server)
# Register tools
register_tools(server)
register_module_tools(server, module_name="gnn")
# Query available tools
tools = get_available_tools()
tools_list = list_available_tools()
resources = list_available_resources()
Key Exports
MCP/MCPServer— server classesMCPTool/MCPResource— tool and resource typescreate_mcp_server/start_mcp_server— server lifecycleregister_tools/register_module_tools— tool registrationprocess_mcp— main pipeline processing functionget_available_tools,list_available_tools,list_available_resources- Error types:
MCPToolNotFoundError,MCPValidationError,MCPModuleLoadError
Output
- MCP configuration in
output/21_mcp_output/ - Tool registration manifests
- Server configuration files
References
- AGENTS.md — Module documentation
- README.md — Usage guide
- SPEC.md — Module specification
- MCP Protocol Spec
Documentation
- README: Module Overview
- AGENTS: Agentic Workflows
- SPEC: Architectural Specification
- SKILL: Capability API
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