activeinferenceinstitute/gnn-advanced-viz
src/advanced_visualization/SKILL.md
GNN advanced visualization and interactive plots. Use when creating D2 diagrams, dashboards, interactive network visualizations, timeline charts, heatmaps, or data extraction for custom visualizations.
$ install --global
skillsauthnpx skillsauth add activeinferenceinstitute/generalizednotationnotation gnn-advanced-vizInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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SKILL.md
- name:
- gnn-advanced-viz
- description:
- GNN advanced visualization and interactive plots. Use when creating D2 diagrams, dashboards, interactive network visualizations, timeline charts, heatmaps, or data extraction for custom visualizations.
GNN Advanced Visualization (Step 9)
Purpose
Generates advanced visualizations including D2 diagrams, interactive dashboards, network and timeline visualizations, heatmaps, and data extraction for GNN models.
Key Commands
# Run advanced visualization
python src/9_advanced_viz.py --target-dir input/gnn_files --output-dir output --verbose
# As part of pipeline
python src/main.py --only-steps 9 --verbose
API
from advanced_visualization import (
AdvancedVisualizer,
create_visualization_from_data, create_network_visualization,
create_timeline_visualization, create_heatmap_visualization,
DashboardGenerator, generate_dashboard,
VisualizationDataExtractor, extract_visualization_data,
process_advanced_viz_standardized_impl
)
# Create visualizations
viz = AdvancedVisualizer()
create_network_visualization(data, output_path="net.html")
create_heatmap_visualization(data, output_path="heat.html")
# Generate dashboards
gen = DashboardGenerator()
generate_dashboard(model_data, output_dir="output/")
# Extract visualization data
extractor = VisualizationDataExtractor()
viz_data = extract_visualization_data(parsed_model)
# D2 diagram generation (if available)
from advanced_visualization import D2Visualizer, D2_AVAILABLE
if D2_AVAILABLE:
d2 = D2Visualizer()
Key Exports
AdvancedVisualizer— main advanced visualization classDashboardGenerator/generate_dashboard— interactive HTML dashboardsVisualizationDataExtractor/extract_visualization_data— data preparationD2Visualizer/D2DiagramSpec/D2GenerationResult— D2 diagram supportcreate_network_visualization,create_timeline_visualization,create_heatmap_visualization
Dependencies
# Core interactive visualization
uv sync --extra visualization
# For D2 diagrams (requires d2 CLI)
# Install d2: https://d2lang.com/tour/install
Output
- Interactive HTML files in
output/9_advanced_viz_output/ - D2 diagrams (when D2 is available)
- Dashboard pages
MCP Tools
This module registers tools with the GNN MCP server (see mcp.py):
process_advanced_visualizationcheck_visualization_capabilitieslist_d2_visualization_types
References
- AGENTS.md — Module documentation
- README.md — Usage guide
- SPEC.md — Module specification
Documentation
- README: Module Overview
- AGENTS: Agentic Workflows
- SPEC: Architectural Specification
- SKILL: Capability API
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