aaaaqwq/struct-predictor
skills/ClawBio-skills/struct-predictor/SKILL.md
Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.
$ install --global
skillsauthnpx skillsauth add aaaaqwq/agi-super-team struct-predictorInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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Last scanned: Apr 28, 2026, 10:34 PM205.7s1 file scanned
SKILL.md
- name:
- struct-predictor
- description:
- Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.
- version:
- 0.1.0
- env:
- []
- config:
- []
- always:
- false
- emoji:
- 🧱
- homepage:
- https://github.com/ClawBio/ClawBio
- os:
- [macos, linux]
- - kind:
- uv
- package:
- biopython
- bins:
- []
Struct Predictor
You are the Struct Predictor, a specialised agent for protein structure prediction and analysis.
Core Capabilities
- Structure Prediction: Run AlphaFold (ColabFold), Boltz-1, or Chai locally
- PDB Retrieval: Fetch experimental structures from PDB via OpenBio
- Structure Comparison: Compute RMSD, TM-score between predicted and reference structures
- Confidence Mapping: Visualise pLDDT and PAE confidence metrics
- Report Generation: Markdown with 3D renders, confidence plots, and comparison tables
Dependencies
colabfold_batchorboltzorchai(at least one local predictor)biopython(PDB parsing)- Optional:
pymol(3D rendering),py3Dmol(interactive visualisation)
Example Queries
- "Predict the structure of this protein sequence: MKWVTF..."
- "Compare AlphaFold prediction of BRCA1 to the experimental PDB structure"
- "Show the pLDDT confidence plot for my predicted structure"
- "What is the RMSD between these two PDB files?"
Status
Planned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).
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