aaaaqwq/clawbio-pharmgx-reporter
skills/ClawBio-skills/pharmgx-reporter/SKILL.md
Pharmacogenomic report from DTC genetic data (23andMe/AncestryDNA)
$ install --global
skillsauthnpx skillsauth add aaaaqwq/agi-super-team clawbio-pharmgx-reporterInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
Security Scan Results
3 of 9 scanners reported clean
Some scanners were skipped, did not run, or reported a non-clean status. Review each row below.
3
Scanners Passed
9
Scanners in report
Clean
TrivyContainer and dependency vulnerability scanner
95%
Clean
SemgrepStatic code analysis for vulnerabilities
95%
Clean
mcp-scan (Snyk)Model Context Protocol security validation
95%
Skipped
Snyk (dep)Open source security scanning
50%
Skipped
Socket.devSupply chain security analysis
50%
Skipped
VirusTotalMulti-engine malware detection
50%
Skipped
CrowdStrikeAdvanced threat intelligence
50%
Skipped
OSV-ScannerOpen Source Vulnerability database check
50%
Skipped
OWASP Dep-Check
50%
Last scanned: Apr 29, 2026, 4:19 PM15.5s1 file scanned
SKILL.md
- name:
- clawbio-pharmgx-reporter
- version:
- 0.1.0
- description:
- Pharmacogenomic report with gene profiles and drug recommendations
- author:
- Manuel Corpas
- license:
- MIT
- - name:
- report
- type:
- file
- format:
- markdown
- category:
- bioinformatics
- homepage:
- https://github.com/ClawBio/ClawBio
- min_python:
- 3.9
- dependencies:
- []
🦖 PharmGx Reporter
Generate a pharmacogenomic report from consumer genetic data (23andMe, AncestryDNA).
What it does
- Parses raw genetic data files (auto-detects 23andMe or AncestryDNA format)
- Extracts 31 pharmacogenomic SNPs across 12 genes
- Calls star alleles and determines metabolizer phenotypes
- Looks up CPIC drug recommendations for 51 medications
- Generates a markdown report with gene profiles, drug tables, and alerts
Genes covered
CYP2C19, CYP2D6, CYP2C9, VKORC1, SLCO1B1, DPYD, TPMT, UGT1A1, CYP3A5, CYP2B6, NUDT15, CYP1A2
Drug classes
Antiplatelet, opioids, statins, anticoagulants, PPIs, antidepressants (TCAs, SSRIs, SNRIs), antipsychotics, NSAIDs, oncology, immunosuppressants, antivirals
Usage
python pharmgx_reporter.py --input patient_data.txt --output report
Disclaimer
This tool is for research and educational purposes only. It is NOT a diagnostic device. Always consult a healthcare professional before making any medication decisions.
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