skills/prismer-ml-experiment/SKILL.md
Design and run machine learning experiments with proper evaluation using jupyter_execute, including training, benchmarking, and ablation studies
npx skillsauth add Zaoqu-Liu/ScienceClaw ml-experimentInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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Design, implement, and evaluate machine learning experiments with reproducible workflows, proper baselines, and statistical analysis.
jupyter_execute - Execute ML code in Python (auto-switches to Jupyter)jupyter_notebook - Manage experiment notebooksupdate_notebook - Set up experiment cellsupdate_latex - Write experiment results to paperslatex_compile - Compile CS conference papers (auto-switches to LaTeX)arxiv_to_prompt - Read related work from arXiv papersupdate_notes - Write experiment logs and analysis summariesWhen user says: "Train a model for [task]"
When user says: "Reproduce [paper title/arXiv ID]"
testing
Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.
tools
Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
development
Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. Best for proteomics, comprehensive MS data processing. For simple spectral comparison and metabolite ID use matchms.
development
Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.