skills/prismer-jupyter/SKILL.md
Create and execute Jupyter notebooks for interactive data analysis using jupyter_execute and jupyter_notebook tools
npx skillsauth add Zaoqu-Liu/ScienceClaw jupyterInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
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Create and execute Jupyter notebooks for interactive data analysis and visualization.
jupyter_execute - Execute Python code in Jupyter kernel (auto-switches to Jupyter)jupyter_notebook - Create, read, update, delete, and list notebooksupdate_notebook - Add or update cells in the notebook without executingupdate_gallery - Display generated plots and visualizations in gallery viewupdate_data_grid - Display structured tabular data (DataFrames, query results) in AG Gridupdate_code - Show code examples and scripts in the Code Playgroundsave_artifact - Save generated artifacts (plots, data files) to workspace collectionWhen user says: "Create a notebook for [analysis]"
When user says: "Run this code"
When user says: "Add explanation for this step"
testing
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tools
Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
development
Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. Best for proteomics, comprehensive MS data processing. For simple spectral comparison and metabolite ID use matchms.
development
Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.