Zaoqu-Liu/skills/fair-data
skills/fair-data/SKILL.md
# FAIR Data Principles — Findable, Accessible, Interoperable, Reusable ## Overview Guidelines for making scientific data FAIR: Findable, Accessible, Interoperable, and Reusable. ## Findable - Assign globally unique persistent identifiers (DOIs) to datasets - Rich metadata describing the dataset (title, authors, description, keywords, dates) - Metadata registered in searchable resources (DataCite, re3data, FAIRsharing) - Data indexed in domain-specific repositories ## Accessible - Data retriev
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SKILL.md
FAIR Data Principles — Findable, Accessible, Interoperable, Reusable
Overview
Guidelines for making scientific data FAIR: Findable, Accessible, Interoperable, and Reusable.
Findable
- Assign globally unique persistent identifiers (DOIs) to datasets
- Rich metadata describing the dataset (title, authors, description, keywords, dates)
- Metadata registered in searchable resources (DataCite, re3data, FAIRsharing)
- Data indexed in domain-specific repositories
Accessible
- Data retrievable by identifier using standardized protocol (HTTP, FTP)
- Metadata accessible even if data is restricted
- Authentication/authorization where necessary, clearly documented
- Long-term preservation plan (minimum 10 years for funded research)
Interoperable
- Use formal, shared vocabularies (ontologies: GO, ChEBI, EFO, MeSH)
- Standard file formats (CSV, JSON, HDF5, NetCDF — not proprietary)
- Include references to related datasets and publications
- Machine-readable metadata (JSON-LD, Dublin Core, schema.org)
Reusable
- Clear data usage license (CC-BY, CC0 recommended for scientific data)
- Detailed provenance (how data was collected, processed, quality controlled)
- Meet community standards (MIAME for microarrays, MINSEQE for sequencing)
- Version control for datasets that evolve
Recommended Repositories
| Domain | Repository | |--------|-----------| | General | Zenodo, Figshare, Dryad | | Genomics | GEO, SRA, ENA | | Proteomics | PRIDE, MassIVE | | Structures | PDB, EMDB | | Clinical | ClinicalTrials.gov, YODA | | Chemistry | ChEMBL, PubChem | | Materials | NOMAD, Materials Cloud |
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