scientific-skills/scholar-evaluation/SKILL.md
Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and actionable feedback.
npx skillsauth add K-Dense-AI/claude-scientific-skills scholar-evaluationInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
3 of 9 scanners reported clean
Some scanners were skipped, did not run, or reported a non-clean status. Review each row below.
Apply the ScholarEval framework to systematically evaluate scholarly and research work. This skill provides structured evaluation methodology based on peer-reviewed research assessment criteria, enabling comprehensive analysis of academic papers, research proposals, literature reviews, and scholarly writing across multiple quality dimensions.
Use this skill when:
When creating documents with this skill, always consider adding scientific diagrams and schematics to enhance visual communication.
If your document does not already contain schematics or diagrams:
For new documents: Scientific schematics should be generated by default to visually represent key concepts, workflows, architectures, or relationships described in the text.
How to generate schematics:
python scripts/generate_schematic.py "your diagram description" -o figures/output.png
The AI will automatically:
When to add schematics:
For detailed guidance on creating schematics, refer to the scientific-schematics skill documentation.
Begin by identifying the type of scholarly work being evaluated and the evaluation scope:
Work Types:
Evaluation Scope:
Ask the user to clarify if the scope is ambiguous.
Systematically evaluate the work across the ScholarEval dimensions. For each applicable dimension, assess quality, identify strengths and weaknesses, and provide scores where appropriate.
Refer to references/evaluation_framework.md for detailed criteria and rubrics for each dimension.
Core Evaluation Dimensions:
Problem Formulation & Research Questions
Literature Review
Methodology & Research Design
Data Collection & Sources
Analysis & Interpretation
Results & Findings
Scholarly Writing & Presentation
Citations & References
For each evaluated dimension, provide:
Qualitative Assessment:
Quantitative Scoring (Optional): Use a 5-point scale where applicable:
To calculate aggregate scores programmatically, use scripts/calculate_scores.py.
Provide an integrated evaluation summary:
Transform evaluation findings into constructive, actionable feedback:
Feedback Structure:
Feedback Format Options:
Adjust evaluation approach based on:
Stage of Development:
Purpose and Venue:
Discipline-Specific Norms:
Detailed evaluation criteria, rubrics, and quality indicators for each ScholarEval dimension. Load this reference when conducting evaluations to access specific assessment guidelines and scoring rubrics.
Search patterns for quick access:
Python script for calculating aggregate evaluation scores from dimension-level ratings. Supports weighted averaging, threshold analysis, and score visualization.
Usage:
python scripts/calculate_scores.py --scores <dimension_scores.json> --output <report.txt>
User Request: "Evaluate this research paper on machine learning for drug discovery"
Response Process:
references/evaluation_framework.md for detailed criteriaThis skill integrates seamlessly with the scientific writer workflow:
After Paper Generation:
SCHOLAR_EVALUATION.md alongside PEER_REVIEW.mdDuring Revision:
Publication Preparation:
This skill is based on the ScholarEval framework introduced in:
Moussa, H. N., Da Silva, P. Q., Adu-Ampratwum, D., East, A., Lu, Z., Puccetti, N., Xue, M., Sun, H., Majumder, B. P., & Kumar, S. (2025). ScholarEval: Research Idea Evaluation Grounded in Literature. arXiv preprint arXiv:2510.16234. https://arxiv.org/abs/2510.16234
Abstract: ScholarEval is a retrieval augmented evaluation framework that assesses research ideas based on two fundamental criteria: soundness (the empirical validity of proposed methods based on existing literature) and contribution (the degree of advancement made by the idea across different dimensions relative to prior research). The framework achieves significantly higher coverage of expert-annotated evaluation points and is consistently preferred over baseline systems in terms of evaluation actionability, depth, and evidence support.
tools
--- name: genomic-intelligence description: Predict regulatory features, gene structure, and expression directly from DNA sequence using Genomic Intelligence's hosted transformer DNA language models — no local GPU or model weights. Six tasks over a REST API and a hosted MCP server (keyless public demo): promoter regions, splice donor/acceptor sites, enhancer activity, chromatin state, sequence-to-expression (log TPM), and de-novo gene annotation, plus a composite find-genes-then-predict-expressi
tools
Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.
tools
Detect host inventory and effective CPU, memory, disk, scheduler, container, and accelerator limits when a user asks for resource-aware planning or before a clearly resource-sensitive local workload. Produces a redacted JSON snapshot and conservative planning helpers without stress tests or assuming visible host hardware is usable.
tools
Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O.