scientific-skills/pennylane/SKILL.md
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch/JAX/TensorFlow. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.
npx skillsauth add K-Dense-AI/claude-scientific-skills pennylaneInstall this skill globally with one command. Works with Claude Code, Cursor, and Windsurf.
3 of 9 scanners reported clean
Some scanners were skipped, did not run, or reported a non-clean status. Review each row below.
PennyLane is a quantum computing library that enables training quantum computers like neural networks. It provides automatic differentiation of quantum circuits, device-independent programming, and seamless integration with classical machine learning frameworks.
Install using uv:
uv pip install pennylane
For quantum hardware access, install device plugins:
# IBM Quantum
uv pip install pennylane-qiskit
# Amazon Braket
uv pip install amazon-braket-pennylane-plugin
# Google Cirq
uv pip install pennylane-cirq
# Rigetti Forest
uv pip install pennylane-rigetti
# IonQ
uv pip install pennylane-ionq
Build a quantum circuit and optimize its parameters:
import pennylane as qml
from pennylane import numpy as np
# Create device
dev = qml.device('default.qubit', wires=2)
# Define quantum circuit
@qml.qnode(dev)
def circuit(params):
qml.RX(params[0], wires=0)
qml.RY(params[1], wires=1)
qml.CNOT(wires=[0, 1])
return qml.expval(qml.PauliZ(0))
# Optimize parameters
opt = qml.GradientDescentOptimizer(stepsize=0.1)
params = np.array([0.1, 0.2], requires_grad=True)
for i in range(100):
params = opt.step(circuit, params)
Build circuits with gates, measurements, and state preparation. See references/quantum_circuits.md for:
Create hybrid quantum-classical models. See references/quantum_ml.md for:
Simulate molecules and compute ground state energies. See references/quantum_chemistry.md for:
Execute on simulators or quantum hardware. See references/devices_backends.md for:
Train quantum circuits with various optimizers. See references/optimization.md for:
Leverage templates, transforms, and compilation. See references/advanced_features.md for:
# 1. Define ansatz
@qml.qnode(dev)
def classifier(x, weights):
# Encode data
qml.AngleEmbedding(x, wires=range(4))
# Variational layers
qml.StronglyEntanglingLayers(weights, wires=range(4))
return qml.expval(qml.PauliZ(0))
# 2. Train
opt = qml.AdamOptimizer(stepsize=0.01)
weights = np.random.random((3, 4, 3)) # 3 layers, 4 wires
for epoch in range(100):
for x, y in zip(X_train, y_train):
weights = opt.step(lambda w: (classifier(x, w) - y)**2, weights)
from pennylane import qchem
# 1. Build Hamiltonian
symbols = ['H', 'H']
coords = np.array([0.0, 0.0, 0.0, 0.0, 0.0, 0.74])
H, n_qubits = qchem.molecular_hamiltonian(symbols, coords)
# 2. Define ansatz
@qml.qnode(dev)
def vqe_circuit(params):
qml.BasisState(qchem.hf_state(2, n_qubits), wires=range(n_qubits))
qml.UCCSD(params, wires=range(n_qubits))
return qml.expval(H)
# 3. Optimize
opt = qml.AdamOptimizer(stepsize=0.1)
params = np.zeros(10, requires_grad=True)
for i in range(100):
params, energy = opt.step_and_cost(vqe_circuit, params)
print(f"Step {i}: Energy = {energy:.6f} Ha")
# Same circuit, different backends
circuit_def = lambda dev: qml.qnode(dev)(circuit_function)
# Test on simulator
dev_sim = qml.device('default.qubit', wires=4)
result_sim = circuit_def(dev_sim)(params)
# Run on quantum hardware
dev_hw = qml.device('qiskit.ibmq', wires=4, backend='ibmq_manila')
result_hw = circuit_def(dev_hw)(params)
For comprehensive coverage of specific topics, consult the reference files:
references/getting_started.md - Installation, basic concepts, first stepsreferences/quantum_circuits.md - Gates, measurements, circuit patternsreferences/quantum_ml.md - Hybrid models, framework integration, QNNsreferences/quantum_chemistry.md - VQE, molecular Hamiltonians, chemistry workflowsreferences/devices_backends.md - Simulators, hardware plugins, device configurationreferences/optimization.md - Optimizers, gradients, variational algorithmsreferences/advanced_features.md - Templates, transforms, JIT compilation, noisedefault.qubit before deploying to hardwareqml.specs() to analyze circuit complexitytools
--- name: genomic-intelligence description: Predict regulatory features, gene structure, and expression directly from DNA sequence using Genomic Intelligence's hosted transformer DNA language models — no local GPU or model weights. Six tasks over a REST API and a hosted MCP server (keyless public demo): promoter regions, splice donor/acceptor sites, enhancer activity, chromatin state, sequence-to-expression (log TPM), and de-novo gene annotation, plus a composite find-genes-then-predict-expressi
tools
Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.
tools
Detect host inventory and effective CPU, memory, disk, scheduler, container, and accelerator limits when a user asks for resource-aware planning or before a clearly resource-sensitive local workload. Produces a redacted JSON snapshot and conservative planning helpers without stress tests or assuming visible host hardware is usable.
tools
Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O.