skills/skillxiv-v0.0.2-claude-opus-4.6/deepcode-agentic-coding/SKILL.md
Transform research specifications into production-grade codebases through strategic information management and autonomous agent orchestration. DeepCode surpasses PhD experts and commercial tools—critical when you need scientific code reproducibility at scale.
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DeepCode treats repository synthesis as an optimization problem, strategically managing information flow to maximize relevant signals within finite context windows. The fully autonomous system orchestrates four complementary operations for code generation, transforming detailed specifications (like scientific papers) into functional, production-quality implementations.
Strategic information orchestration through four complementary operations:
# Agentic code generation system
class DeepCodeAgent:
def __init__(self, llm_model, context_window=8000):
self.model = llm_model
self.context_limit = context_window
self.operations = {
'blueprint_distillation': BlueprintDistillation(),
'code_memory': StatefulCodeMemory(),
'retrieval_augmented': RetrievalAugmentedGeneration(),
'error_correction': ClosedLoopErrorCorrection()
}
def synthesize_repository(self, specification):
"""
Transform specification into complete codebase.
Manages information flow within context constraints.
"""
# Stage 1: Blueprint distillation
blueprint = self.distill_blueprint_from_specification(specification)
# Stage 2: Initialize code memory
code_memory = self.initialize_code_memory(blueprint)
# Stage 3: Orchestrate generation with RAG
generated_files = self.generate_with_rag(blueprint, code_memory)
# Stage 4: Iterative error correction
corrected_files = self.correct_and_refine(
generated_files,
blueprint,
code_memory
)
return corrected_files
def distill_blueprint_from_specification(self, spec):
"""
Compress specification to essential architecture information.
Source compression maximizes relevant signals in context.
"""
# Extract key components from specification
components = self.extract_components(spec)
dependencies = self.extract_dependencies(spec)
interfaces = self.extract_interfaces(spec)
algorithms = self.extract_algorithms(spec)
# Create compressed blueprint
blueprint = {
'components': components,
'dependencies': dependencies,
'interfaces': interfaces,
'algorithms': algorithms,
'estimated_context': self.estimate_total_context(spec)
}
# Truncate specification to fit context
compressed_spec = self.compress_specification(
spec,
blueprint,
self.context_limit
)
blueprint['compressed_spec'] = compressed_spec
return blueprint
def extract_components(self, specification):
"""
Identify major software components from specification.
"""
# Parse specification to find modules, classes, functions
components = []
prompt = f"""
Identify major software components in:
{specification[:2000]}
Return: component names, responsibilities, dependencies
"""
components_text = self.model.generate(prompt)
return self.parse_components(components_text)
def initialize_code_memory(self, blueprint):
"""
Create structured memory for generated code.
Enables efficient retrieval and cross-file references.
"""
code_memory = StatefulCodeMemory()
for component in blueprint['components']:
# Initialize memory entry for each component
code_memory.add_component(
name=component['name'],
purpose=component['purpose'],
dependencies=component['dependencies']
)
# Register interfaces
for interface in blueprint['interfaces']:
code_memory.add_interface(
name=interface['name'],
signature=interface['signature']
)
return code_memory
def generate_with_rag(self, blueprint, code_memory):
"""
Retrieval-augmented generation strategically injects knowledge.
Retrieves relevant code context when generating new sections.
"""
generated_files = {}
for component in blueprint['components']:
# Retrieve relevant code context
relevant_context = code_memory.retrieve(
query=component['purpose'],
top_k=3
)
# Construct generation prompt
prompt = self.construct_generation_prompt(
component=component,
blueprint=blueprint,
relevant_context=relevant_context,
existing_code=generated_files
)
# Generate code for component
generated_code = self.model.generate(prompt)
# Validate and store
generated_files[component['name']] = generated_code
# Update memory with generated code
code_memory.add_code(
component['name'],
generated_code
)
return generated_files
def construct_generation_prompt(self, component, blueprint, relevant_context, existing_code):
"""
Carefully craft prompt to maximize context usage.
"""
prompt_parts = []
# Part 1: Component specification
prompt_parts.append(f"""
Generate code for component: {component['name']}
Purpose: {component['purpose']}
""")
# Part 2: Relevant context from code memory
if relevant_context:
prompt_parts.append(f"""
Reference existing implementations:
{relevant_context}
""")
# Part 3: Interface requirements
prompt_parts.append(f"""
Required interfaces:
{self.format_interfaces(component['dependencies'])}
""")
# Part 4: Existing code to maintain consistency
if existing_code:
prompt_parts.append(f"""
Maintain compatibility with existing code:
{self.summarize_existing_code(existing_code)}
""")
prompt = "\n".join(prompt_parts)
# Ensure prompt fits within context
if len(prompt) > self.context_limit:
prompt = prompt[:self.context_limit]
return prompt
def correct_and_refine(self, generated_files, blueprint, code_memory):
"""
Closed-loop error correction refines outputs iteratively.
"""
corrected_files = generated_files.copy()
max_iterations = 3
for iteration in range(max_iterations):
# Test generated code
errors = self.test_files(corrected_files)
if not errors:
break # No errors, done
# Generate corrections
for file_name, error_list in errors.items():
correction_prompt = f"""
Fix errors in {file_name}:
Current code:
{corrected_files[file_name][:1000]}
Errors:
{self._format_errors(error_list)}
Provide corrected code.
"""
corrected_code = self.model.generate(correction_prompt)
corrected_files[file_name] = corrected_code
# Update code memory
code_memory.update_code(file_name, corrected_code)
return corrected_files
def test_files(self, generated_files):
"""
Execute and validate generated code.
Identify errors for correction.
"""
errors = {}
for file_name, code in generated_files.items():
# Attempt to execute and check for syntax/runtime errors
exec_errors = self.execute_and_validate(code)
if exec_errors:
errors[file_name] = exec_errors
return errors
def compress_specification(self, spec, blueprint, context_limit):
"""
Compress specification to fit within context window.
Keep essential information, remove redundancy.
"""
# Priority: algorithms > interfaces > examples
essential_spec = ""
# Add algorithms (highest priority)
for algo in blueprint['algorithms']:
essential_spec += f"\n{algo['description']}"
# Add interfaces
for interface in blueprint['interfaces']:
essential_spec += f"\n{interface['signature']}"
# Truncate if still too large
if len(essential_spec) > context_limit:
essential_spec = essential_spec[:context_limit]
return essential_spec
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